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FinnGen Handbook
  • Introduction
  • Where to begin
  • Background Concepts
    • Basics of Genetics
    • Linkage Disequilibrium (LD)
    • Genotype Imputation
    • Genotype Data Processing and Quality Control (QC)
    • GWAS Analysis
    • P Values
    • GWAS Meta-analysis
    • Heritability and genetic correlations
    • Finemapping
    • Conditional analysis
    • Colocalization
    • Using Polygenic Risk Scores
    • PheWAS analysis
    • Survival analysis
    • Longitudinal Data Analysis
    • GWAS Association to Biological Function
    • Genetic Data Resources outside FinnGen
    • Getting Started with Unix
    • Getting Started with R
    • Structure of the FinnGen project
    • Finnish gene pool and health register data
  • FinnGen Data Specifics
  • Disease Specific Task Forces
  • Working in the Sandbox
  • Working outside the Sandbox
  • FAQ
  • Release Notes
  • Tool Catalog
  • Glossary
  • User Support
  • Data Protection & Security
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Background Concepts

FinnGen data analysts are from a variety of backgrounds - some more clinical, some more bench science, and some more computational.

Here we have gathered some of our internally recommended resources if some topics are unfamiliar to you:

  • Basics of Genetics

  • Linkage Disequilibrium (LD)

  • Genotype Imputation

  • Genotype Data Processing and Quality Control (QC)

  • GWAS Analysis

  • P Values

  • Heritability and genetic correlations

  • Finemapping

  • Colocalization

  • Using Polygenic Risk Scores

  • PheWAS Analysis

  • Longitudinal Data Analysis

  • Introduction to Atlas

  • GWAS Association to Biological Function

  • Genetic Data Resources outside of FinnGen

  • Getting Started with Unix

  • Getting Started with R

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Last updated 1 year ago

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