> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/background-reading/phewas-analysis-compared-to-gwas.md).

# PheWAS analysis

### Difference between PheWAS and GWAS

The difference between PheWAS (Phenome-wide association studies) and GWAS is the **direction of inference.**

In **GWAS**, we look at all **variants’ effect on one phenotype**, whereas a **PheWAS** looks at one **variant’s effect** **on numerous phenotypes**.
