FinnGen Handbook

FinnGen Handbook

Introduction
Where to begin
Background Concepts
FinnGen Data Specifics
Disease Specific Task Forces
Working in the Sandbox
Working outside the Sandbox
FAQ
Release Notes
Tool Catalog
Glossary
User Support
Data Protection & Security

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FAQ

Endpoints

Questions related to FinnGen's endpoints and health outcomes available.

PreviousWhy is the case number dropping after the "Check pre-conditions, main-only, mode, ICD version" step?NextWhere do I find the most recent list of FinnGen endpoints?

Last updated 10 months ago

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Where do I find the most recent list of FinnGen endpoints?

What does it mean when an endpoint has “mode” at the end?

What scenario would cause an NA (missing data) entry rather than a zero?

Does it mean anything when a value is written as $!$ instead of NA?

Why is there an inconsistency between ICD10 code J84.1 (IPF) and J84.112?

How are control endpoints calculated?

Can I get a list of FinnGen IDs by control group for my endpoint?

What does Level C mean in the endpoints data table?

What does the SUBSET_COV field show?

Why is there a "K." prefix on some endpoints?

Why there are fewer endpoints going from R5 (N = 2,925) to R8 (N = 2,202)?

Should I include primary care registry (PRIM_OUT) codes in my cohort definitions?

I found BL_AGE after FU_END_AGE in the endpoint data, how is it possible?

Why do individuals who are not dead have death age in endpoint data?

I found EVENT_AGE after FU_END_AGE in endpoint data, how is it possible?