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FinnGen Handbook
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  • Introduction
  • Where to begin
  • Background Concepts
  • FinnGen Data Specifics
    • FinnGen Data Freezes and Releases
    • Analysis proposals
    • Finnish Health Registries and Medical Coding
    • Endpoints
      • FinnGen clinical endpoints
      • History of creating the FinnGen endpoints
      • Location of FinnGen Endpoint and Control Description Files
      • Interpretation of Endpoint Definition file
      • Location of Endpoint Quality Control Report
      • Creating a User-defined Endpoint(s)
      • Requesting a User-defined Endpoint to be included in Core Analysis
      • Complete follow-up time of the FinnGen registries – primary endpoint data
    • Biobanks in Finland
    • Red Library Data (individual level data)
    • Green Library Data (aggregate data)
    • Disease specific Task Force data
    • Expansion Area 3 (EA3) studies
  • Disease Specific Task Forces
  • Working in the Sandbox
  • Working outside the Sandbox
  • Publishing FinnGen results
  • FAQ
  • Release Notes
  • Tool Catalog
  • Glossary
  • User Support & Training
  • Data Protection & Security
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  1. FinnGen Data Specifics

Endpoints

The FinnGen endpoints are carefully curated phenotypes based on the Finnish registers and register code sets.

In this section, we elaborate on:

  • FinnGen clinical endpoints

  • History of creating the FinnGen endpoints

  • Location of FinnGen Endpoint and Control Description Files

  • Interpretation of Endpoint Definition File

  • Location of Endpoint Quality Control Report

  • Creating a User-defined Endpoint

  • Requesting a User-defined Endpoint to be included in Core Analysis

  • Complete follow-up time of the FinnGen registries - primary endpoint data

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Last updated 2 years ago

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