> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/colocalization-results-format/results-format-in-colocalization-before-df13.md). # Results format in colocalization before DF13 **The colocalization data contains data that was acquired by running a colocalization analysis between FinnGen data and other datasets.** The colocalization results are tab-separated files. The results contain one source1-phenotype1-locus1 source2-phenotype2-locus2-pair per line. More information about data sources, phenotypes and loci can be found in the [Colocalization in FinnGen](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations) page. The results contains the following columns:
| Column name | Column description | | ------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | source1 | Data source 1, always FinnGen | | source2 | Data source 2 | | pheno1 | Phenotype 1 | | pheno2 | Phenotype 2 | | pheno1\_description | Description of phenotype 1 | | pheno2\_description | Description of phenotype 2 | | quant1 | Data quantification for phenotype 1. For eQTL Catalog data, this can be exon counts, gene counts, transcript usage, txrevise event usage. For other sources blank. | | quant2 | Data quantification for phenotype 1. For eQTL Catalog data, this can be exon counts, gene counts, transcript usage, txrevise event usage. For other sources blank. | | tissue1 | Tissue for phenotype 1 if applicable | | tissue2 | Tissue for phenotype 1 if applicable | | locus\_id1 | Locus identifier of credible set of pheno1, locus\_id = top SNP (max PIP). Formatted as CHROM\_POS\_REF\_ALT | | locus\_id2 | Locus identifier of credible set of pheno2, locus\_id = top SNP (max PIP). Formatted as CHROM\_POS\_REF\_ALT | | chrom | Chromosome where the loci are | | start | Start position of intersecting credible sets (in bp, on build hg38) | | stop | End position of intersecting credible sets (in bp, on build hg38) | | clpp | Colocalization posterior probability: sum\_i(PIP1\_i\*PIP2\_i). See [Colocalization in FinnGen](/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations.md) for more information | | clpa | Colocalization posterior agreement: sum\_i(min(PIP1\_i,PIP2\_i)). See [Colocalization in FinnGen](/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations.md) for more information | | vars | Intersecting variants | | len\_cs1 | Amount of variants in pheno1 credible set | | len\_cs2 | Amount of variants in pheno2 credible set | | len\_inter | Amount of variants shared between credible set 1 and credible set 2 | | vars1\_info | Information about variants in the credible set of phenotype 1. Each variant has its variant identifier, PIP, beta, and p-value. Variant fields are separated by comma, and variants are separated by semicolon. | | vars2\_info | Information about variants in the credible set of phenotype 2. Each variant has its variant identifier, PIP, beta, and p-value. Variant fields are separated by comma, and variants are separated by semicolon. | | beta1 | effect size of lead SNP in locus 1 | | beta2 | effect size of lead SNP in locus 2 | | pval1 | p-value of lead SNP in locus 1 | | pval2 | p-value of lead SNP in locus 2 | More information about the methods can be found in th [Colocalization in FinnGen](/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations.md) page, as well as the methods document: `/finngen/library-green/finngen_R12_analysis_data/colocalization/methods.pdf` \ More documentation about the data, including the columns and their descriptions, can be found in the release notes. Read more about [Colocalization](/background-reading/colocalization.md) and [Colocalization in FinnGen](/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations.md)