# Heritabilities

The main output of the pipeline is a file of the format `finngen_R[?]_[EUR/FIN].ldsc.heritability.tsv` where EUR/FIN depends on the LD panel used. The file contains information about the heritability of all FinnGen phenotypes.

| **PHENO** | **Phenotype**                         |
| --------- | ------------------------------------- |
| H2        | Heritability                          |
| SE        | Standard Error on heritability        |
| INT       | Intercept                             |
| INT\_SE   | Error on Intercept                    |
| RATIO     | Ratio ((intercept-1)/(mean(chi^2)-1)) |
| RATIO\_SE | Error of ratio                        |

The data is also stored in `finngen_R[?]_[EUR/FIN].ldsc.heritability.json` in the json format.

Read more about [heritability and genetic correlations](https://docs.finngen.fi/background-reading/heritability-and-genetic-correlations).