# UKBB-FinnGen meta-analysis file formats

The meta-analysis result files are TSV [tabix-indexed](http://www.htslib.org/doc/tabix.html) files compressed with bgzip, which contain the summary statistics from the FinnGen and UKBB analyses and the summary statistics of the meta-analysis. The columns of the table are described below.

Read more about the [UKBB-FinnGen meta-analysis](/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/meta-analyses.md).

| **Column name**             | **Description**                                                  |
| --------------------------- | ---------------------------------------------------------------- |
| #CHR                        | Chromosome                                                       |
| POS                         | Position                                                         |
| REF                         | Reference base                                                   |
| ALT                         | Alternative allele(s)                                            |
| SNP                         | Variant in format #CHR:POS:REF:ALT                               |
| FINNGEN\_beta               | FinnGen summary beta                                             |
| FINNGEN\_sebeta             | FinnGen summary standard deviation                               |
| FINNGEN\_pval               | FinnGen summary p-value                                          |
| FINNGEN\_af\_alt            | FinnGen alternative allele frequency                             |
| FINNGEN\_af\_alt\_cases     | FinnGen alternative allele frequency in cases                    |
| FINNGEN\_af\_alt\_controls  | FinnGen alternative allele frequency in controls                 |
| UKBB\_beta                  | UKBB summary beta                                                |
| UKBB\_sebeta                | UKBB summary standard deviation                                  |
| UKBB\_pval                  | UKBB summary p-value                                             |
| UKBB\_af\_alt               | UKBB alternative allele frequency                                |
| all\_meta\_N                | Number of studies used for meta-analysis                         |
| all\_inv\_var\_meta\_beta   | Inverse-variance weighted meta-analysis beta                     |
| all\_inv\_var\_meta\_sebeta | Inverse-variance weighted meta-analysis standard deviation       |
| all\_inv\_var\_meta\_p      | Inverse-variance weighted meta-analysis p-value                  |
| all\_inv\_var\_meta\_mlogp  | Inverse-variance weighted meta-analysis -log10(p-value)          |
| all\_inv\_var\_het\_p       | Inverse-variance weighted meta-analysis Cochran's Q test p-value |
| rsid                        | Reference SNP ID assigned by dbSNP                               |


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