Genotype Files in Sandbox
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Last updated
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This page has been last updated for R11.
FinnGen updates genotype data in each and makes these files available to Sandbox users.
Genotype data is available in the following sandbox directory:
/finngen/library-red/finngen_R[RELEASE]
Data Release 12: /finngen/library-red/finngen_R12
Data Release 11: /finngen/library-red/finngen_R11
Data Release 10: /finngen/library-red/finngen_R10
Data Release 9: /finngen/library-red/finngen_R9
Data Release 8: /finngen/library-red/finngen_R8
Data Release 7: /finngen/library-red/finngen_R7
Data Release 6: /finngen/library-red/finngen_R6
Data Release 5: /finngen/library-red/finngen_R5
Data Release 4: /finngen/library-red/finngen_R4
Data Release 3: /finngen/library-red/finngen_R3_core_analysis_results
Data Release 2: /finngen/library-red/finngen_R2_core_analysis_results
Data Release 1: /finngen/library-red/finngen_R1_core_analysis_results
The data files are described in the following sections:
/finngen/library-red/finngen_R12/kinship_1.0/
/finngen/library-red/finngen_R12/pca_1.0/
/finngen/library-red/finngen_R12/analysis_covariates/
/finngen/library-red/finngen_R12/genotype_1.0/
/finngen/library-red/finngen_R12/genotype_plink_2.0/
/finngen/library-red/finngen_R12/bgen_2.0/
Additional notes
FinnGen DF12 genotype data (version 1.0) has been deleted
/finngen/library-red/finngen_R12/genotype_1.0/
Please see /finngen/library-red/finngen_R12/genotype_1.0/DELETED.README
Imputed genotypes in VCF format
/finngen/library-red/finngen_R11/genotype_1.0/
Imputed genotypes in BGEN format
/finngen/library-red/finngen_R11/bgen/
Imputed genotypes in PLINK format
/finngen/library-red/finngen_R11/genotype_plink_1.0/
Chip data
/finngen/library-red/finngen_R11/chipd_1.0/
Imputed HLA alleles
/finngen/library-red/finngen_R11/hla_1.0/
Principal components analysis (PCA) data
/finngen/library-red/finngen_R11/pca_1.0/
Kinship data
/finngen/library-red/finngen_R11/kinship_1.0/
Analysis covariates
/finngen/library-red/finngen_R11/analysis_covariates/
Polygenic risk scores
/finngen/library-red/finngen_R11/prs_1.0/
Genetic relationships
/finngen/library-red/finngen_R11/grm_1.0/
Mosaic chromosomal alterations
/finngen/library-red/finngen_R11/mca_1.0/
List of all files in the release
/finngen/library-red/finngen_R11/catalog/catalog.txt
See to view all data releases to the Sandbox.
FinnGen DF12 (version 1.0)
FinnGen DF12 data (version 1.0)
FinnGen DF12
FinnGen DF12 (version 2.0)
FinnGen DF12 (version 2.0)
FinnGen DF12 (version 2.0)