> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/genotype-plink-data.md).

# Imputed genotypes in PLINK format

This page has been last updated for R11.

### Sandbox directory

Imputed genotypes in the [PLINK](https://www.cog-genomics.org/plink2/input#bed) format are available in the following Sandbox directory:

`/finngen/library-red/finngen_R[RELEASE]/genotype_plink_1.0`

### Data files

Two sets of PLINK files are available:

* all variants
* HapMap3 filtered variants

Both sets come with their `.bed,` `.bim` `.fam, .afreq` files.

Please refer to the readme file in sandbox directory for full details of the available data.

#### All variants

All variants are available in the following files:

`data/finngen_R[RELEASE].bed`

`data/finngen_R[RELEASE].bim`

`data/finngen_R[RELEASE].fam`

`data/finngen_R[RELEASE].afreq`

#### HapMap3 filtered variants

HapMap3 filtered variants are available in the following files:

`data/finngen_R[RELEASE]_hm3.bed`

`data/finngen_R[RELEASE]_hm3.bim`

`data/finngen_R[RELEASE]_hm3.fam`

`data/finngen_R[RELEASE]_hm3.afreq`

### Further information

Read more about the [Plink 2.0 data format](https://www.cog-genomics.org/plink/2.0/formats).