Imputed genotypes in VCF format
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This page has been last updated for R11.
Imputed genotypes in the format are available in the following Sandbox directory:
/finngen/library-red/finngen_R[RELEASE]/genotype_1.0
One VCF file is available for each chromosome:
data/finngen_R[RELEASE]_chr[CHROM].vcf.gz
The VCF files come with their .tbi files.
Please refer to the readme file in sandbox directory for full details of the available data.
The imputed genotype data is comprised of multiple data sets that include samples from various cohorts. The exact batches and cohorts as well as VCF INFO field tags are explained in release supplementary files. INFO metrics and allele frequencies (AF) are calculated per dataset, as well as for the entire dataset.
The data contains only variants present in the . is released separately. Duplicate individuals (excluding identical twins) and biobank denials have been removed from the data.
All variants are on the forward strand.