Imputed HLA alleles

This page has been last updated for R11.

Sandbox directory

HLA alleles (short tandem repeat) genotypes are available in the following sandbox directory:

/finngen/library-red/finngen_R[RELEASE]/hla_1.0/

Data files

• R[RELEASE]_HLA.bgen: HLA allele genotype data in bgen format

• R[RELEASE]_HLA.bgen.bgi: HLA allele genotype index in bgen format

• R[RELEASE]_HLA.bgen.sample: HLA allele genotype sample file

• R[RELEASE]_HLA.bgen.snpstats: HLA allele snpstats file

• dosage/[GENE].dosage: Dosage dta for a single gene

• dosage/[GENE].dosage.map: Dosage mapping file

Data is available for the following HLA genes: A, B, C, DPB1, DQA1, DQB1, DRB1, DRB3, DRB4, and DRB5.

Please refer to the readme file in the sandbox directory for full details of the available data.

Further information

Read more about the HLA imputation method.