> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/single-cell-transcriptomics-and-immune-profiling.md).

# Single-cell transcriptomics and immune profiling

The data were generated as part of the FinnGen 2 Expansion Area 5 (EA5) pilot. All experiments were performed at the Klarman and Broad Institute.

README file and raw data:

`/finngen/library-red/EA5/mutliome/batch1_3/`

PBMC sample timestamps can be found in:

`EA5/omics_metadata/20250130_EA5_PBMCs_Metadata_All.csv`

The variant list based on what the PBMC samples were selected for the analysis:

`/finngen/library-red/EA5/mutliome/batch1_3/batch1_4_finnish_enriched_variants_list.tsv`