> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/whole-genome-sequencing-wgs-data.md).

# Whole genome sequencing (WGS) data

### Data sets: 

Two data sets of WGS variant calls are available in the Sandbox.

One data set contains WGS variant calls (VCFs) from 2,463 samples from gnomAD v3. The samples come from the FINRISK, H2000, Migraine, and SUPER legacy cohorts.

The other data set contains VCFs from 3,237 WGS'd FINRISK (FR92, FR97, FR02, FR07) legacy samples from SISu v4.

Note that both data sets are raw (non-QC'd).

### Data location and readme: 

/finngen/library-red/wgs\_gnomad\_v3\_no\_qc/

/finngen/library-red/wgs\_sisu\_v4\_no\_qc/