# FinnGen Handbook

## FinnGen Handbook

- [Introduction](https://docs.finngen.fi/readme.md)
- [Where to begin](https://docs.finngen.fi/where-to-begin....md)
- [Quick guides](https://docs.finngen.fi/where-to-begin.../quick-guides.md)
- [New to FinnGen](https://docs.finngen.fi/where-to-begin.../quick-guides/new-to-finngen.md)
- [Green data users](https://docs.finngen.fi/where-to-begin.../quick-guides/green-data-users.md)
- [Red data users](https://docs.finngen.fi/where-to-begin.../quick-guides/red-data-users.md)
- [I'm new to FinnGen, where is the best place for me to start?](https://docs.finngen.fi/where-to-begin.../im-a-clinician-new-to-finngen-where-is-the-best-place-for-me-to-start.md)
- [How to start using FinnGen individual-level data?](https://docs.finngen.fi/where-to-begin.../i-want-to-get-started-using-finngen-data-in-sandbox.md)
- [What kind of questions can I ask of FinnGen data?](https://docs.finngen.fi/where-to-begin.../what-kind-of-questions-can-i-ask-of-the-data.md)
- [How do I make a custom endpoint?](https://docs.finngen.fi/where-to-begin.../how-do-i-make-a-custom-endpoint.md)
- [How do I run a GWAS of a phenotype I created myself?](https://docs.finngen.fi/where-to-begin.../how-do-i-run-a-gwas-of-a-phenotype-i-create-myself.md)
- [I'm interested in FinnGen rare variant phenotypes](https://docs.finngen.fi/where-to-begin.../im-interested-in-finngen-rare-variant-phenotypes.md)
- [Background Concepts](https://docs.finngen.fi/background-reading.md)
- [Basics of Genetics](https://docs.finngen.fi/background-reading/genetics-basics.md)
- [Linkage Disequilibrium (LD)](https://docs.finngen.fi/background-reading/linkage-disequilibrium-ld.md)
- [Genotype Imputation](https://docs.finngen.fi/background-reading/imputation.md)
- [Genotype Data Processing and Quality Control (QC)](https://docs.finngen.fi/background-reading/genotype-process.md)
- [GWAS Analysis](https://docs.finngen.fi/background-reading/gwas-analysis.md)
- [P Values](https://docs.finngen.fi/background-reading/p-values.md)
- [GWAS Meta-analysis](https://docs.finngen.fi/background-reading/gwas-meta-analysis.md)
- [Heritability and genetic correlations](https://docs.finngen.fi/background-reading/heritability-and-genetic-correlations.md)
- [Finemapping](https://docs.finngen.fi/background-reading/finemapping.md)
- [Conditional analysis](https://docs.finngen.fi/background-reading/conditional-analysis.md)
- [Colocalization](https://docs.finngen.fi/background-reading/colocalization.md)
- [Using Polygenic Risk Scores](https://docs.finngen.fi/background-reading/using-prs-data.md)
- [PheWAS analysis](https://docs.finngen.fi/background-reading/phewas-analysis-compared-to-gwas.md)
- [Survival analysis](https://docs.finngen.fi/background-reading/survival-analysis.md)
- [Longitudinal Data Analysis](https://docs.finngen.fi/background-reading/references-on-longitudinal-data-analysis-ohdsi-soren-brunak.md)
- [GWAS Association to Biological Function](https://docs.finngen.fi/background-reading/gwas-association-to-biology.md)
- [Genetic Data Resources outside FinnGen](https://docs.finngen.fi/background-reading/genetic-data-resources.md)
- [Getting Started with Unix](https://docs.finngen.fi/background-reading/how-to-get-started-with-unix.md)
- [Getting Started with R](https://docs.finngen.fi/background-reading/how-to-get-started-with-r.md)
- [Structure of the FinnGen project](https://docs.finngen.fi/background-reading/structure-of-the-finngen-project.md)
- [Finnish gene pool and health register data](https://docs.finngen.fi/background-reading/basics-of-what-is-unique-about-finnish-healthcare-and-health-data.md)
- [FinnGen Data Specifics](https://docs.finngen.fi/finngen-data-specifics.md)
- [FinnGen Data Freezes and Releases](https://docs.finngen.fi/finngen-data-specifics/finngen-data-freezes-and-releases.md)
- [Analysis proposals](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals.md)
- [What is a FinnGen analysis proposal and when do I need to submit one?](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/when-do-i-need-to-submit-an-analysis-proposal.md)
- [How do I submit an analysis proposal?](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/how-do-i-submit-an-analysis-proposal.md)
- [How are analysis proposals handled?](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/how-are-analysis-proposals-handled.md)
- [What is a FinnGen bespoke analysis proposal and when do I need to submit one?](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/what-is-a-finngen-bespoke-analysis-proposal-and-when-do-i-need-to-submit-one.md)
- [How do I submit a bespoke analysis proposal?](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/how-do-i-submit-a-bespoke-analysis-proposal.md)
- [How are bespoke analysis proposals handled?](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/how-are-bespoke-analysis-proposals-handled.md)
- [What is the difference between FinnGen analysis proposals and FinnGen bespoke analyses?](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/what-is-the-difference-between-finngen-analysis-proposals-and-finngen-bespoke-analyses.md)
- [Existing analysis proposals](https://docs.finngen.fi/finngen-data-specifics/about-analysis-proposals/existing-analysis-proposals.md)
- [Finnish Health Registries and Medical Coding](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding.md)
- [Finnish health registries](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding/finnish-health-registers.md)
- [Register data pre-processing](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding/register-data-pre-processing.md)
- [Data Masking/Blurring of Visit Dates](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding/data-masking-blurring-of-visit-dates.md)
- [International and Finnish Health Code Sets](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding/international-and-finnish-health-code-sets.md)
- [More information on health code sets](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding/more-information-on-health-code-sets.md)
- [VNR code mapping to RxNorm](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding/vnr-code-mapping-to-rxnorm.md): Details of VNR codes in finngen R6 mapped to standard RxNorm
- [Register code translation files](https://docs.finngen.fi/finngen-data-specifics/finnish-health-registers-and-medical-coding/where-to-find-the-translation-file-for-phenotype-data.md)
- [Endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints.md)
- [FinnGen clinical endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/finngen-clinical-endpoints.md)
- [History of creating the FinnGen endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/history-of-creating-the-finngen-endpoints.md): Concept, definitions and format, register data processing and actual endpoint algorithms
- [Location of FinnGen Endpoint and Control Description Files](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located.md)
- [What's new in DF14 endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df14-endpoints.md)
- [What's new in DF13 endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df13-endpoints.md)
- [What’s new in DF12 endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df12-endpoints.md)
- [What’s new in DF11 endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df11-endpoints.md)
- [What’s new in the DF10 endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-the-df10-endpoints.md)
- [What’s new in DF9 endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df9-endpoints.md)
- [What’s new in DF8 endpoints](https://docs.finngen.fi/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df8-endpoints.md)
- [Interpretation of Endpoint Definition file](https://docs.finngen.fi/finngen-data-specifics/endpoints/how-to-interpret-endpoint-definition-file.md)
- [Location of Endpoint Quality Control Report](https://docs.finngen.fi/finngen-data-specifics/endpoints/endpoint-quality-control-for-data-freeze-8.md)
- [Creating a User-defined Endpoint(s)](https://docs.finngen.fi/finngen-data-specifics/endpoints/link-to-how-to-make-a-user-defined-endpoint.md)
- [Requesting a User-defined Endpoint to be included in Core Analysis](https://docs.finngen.fi/finngen-data-specifics/endpoints/requesting-a-user-defined-endpoint-to-be-part-of-core-analysis.md)
- [Complete follow-up time of the FinnGen registries – primary endpoint data](https://docs.finngen.fi/finngen-data-specifics/endpoints/complete-follow-up-time-of-the-finngen-registries-primary-endpoint-data.md)
- [Survival analysis using the truncated endpoint file – secondary endpoint data](https://docs.finngen.fi/finngen-data-specifics/endpoints/complete-follow-up-time-of-the-finngen-registries-primary-endpoint-data/survival-analysis-using-the-truncated-endpoint-file-secondary-endpoint-data.md)
- [Biobanks in Finland](https://docs.finngen.fi/finngen-data-specifics/biobanks-in-finland.md)
- [Specifics of the Blood Service Biobank data](https://docs.finngen.fi/finngen-data-specifics/biobanks-in-finland/specifics-of-the-blood-service-biobank-data.md): Due to specific blood donation eligibility criteria, Blood Service Biobank participants share distinct features.
- [Red Library Data (individual level data)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data.md)
- [Genotype data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data.md)
- [Genotype Arrays Used](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/affymetrix-chip-and-its-design.md)
- [Legacy cohorts and chips](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/affymetrix-chip-and-its-design/legacy-cohorts-and-chips.md)
- [Imputation Panel](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel.md)
- [Sisu v4.2 reference panel](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v4.2-reference-panel.md)
- [Variant-wise QC metrics file](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v4.2-reference-panel/variant-wise-qc-metrics-file.md)
- [Sisu v4 reference panel](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v4-reference-panel.md)
- [Sisu v3 reference panel](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v3-reference-panel.md)
- [Genome build used in FinnGen](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/human-genome-build-we-use-and-how-do-we-report-genotypes.md)
- [Genotype Data Processing Flow](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/description-of-how-the-data-is-processed-in-refinery.md)
- [Genotype Files in Sandbox](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available.md)
- [Imputed genotypes in VCF format](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/imputation-data-file.md)
- [Imputed genotypes in BGEN format](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/bgen-file.md)
- [Imputed genotypes in PLINK format](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/genotype-plink-data.md)
- [Chip data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/chip-data-file.md)
- [Imputed HLA alleles](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/imputed-hla-alleles.md)
- [Principal components analysis (PCA) data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/pca-data.md)
- [Kinship data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/kinship-data.md)
- [Analysis covariates](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/covariate-file.md)
- [Polygenic risk scores (PRS)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/prs-data.md)
- [Genetic Ancestry](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/genetic-ancestry.md)
- [Genetic relationships (GRM)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/grm-data.md)
- [Mosaic chromosomal alterations (mCA)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/mca-data.md)
- [Prune data (R9)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/prune-data.md)
- [Imputed STR genotypes (R8)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/imputed-str-genotypes.md)
- [Phenotype data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1.md)
- [Register data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/registers-in-the-detailed-longitudinal-data.md)
- [Detailed longitudinal data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/detailed-longitudinal-data.md)
- [Splitting combination codes in detailed longitudinal data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/detailed-longitudinal-data/what-are-combination-codes-and-how-they-are-separated-in-detailed-longitudinal-data.md)
- [Service sector data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/service-sector-data.md)
- [Service sector data code translations](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/service-sector-data/service-sector-data-code-translations.md)
- [Endpoint and endpoint longitudinal data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/endpoint-and-endpoint-longitudinal-data.md)
- [Kanta lab values](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values.md)
- [Data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/data.md)
- [V2 info](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/data/v2-info.md)
- [FAQ](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/faq.md): Explanations for common questions about the Kanta lab values dataset
- [How-to guides](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/how-to-guides.md)
- [Kanta prescriptions](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-prescriptions.md): Kanta prescription data file was introduced in Data Release 12. It contains data about prescriptions in Kanta.
- [Kanta medication delivery](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-medication-delivery.md): Kanta medication delivery data file was introduced in Data Release 12. It contains data about medications that were delivered in Kanta.
- [Drug Events](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/drug-events.md): Drug events table is a combined table of drug events from Kela Purchase, Kanta Medication delivery and Kanta Prescription registries.
- [Minimum extended phenotype data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minumum-extended-phenotype-data.md)
- [Extracting minimum phenotype data per biobank](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minumum-extended-phenotype-data/extraction-of-finngen-minimum-data-set-information-per-biobank.md)
- [DNA isolation protocols per biobank](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minumum-extended-phenotype-data/dna-isolation-protocols-per-biobank.md)
- [Minimum longitudinal data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minimum-longitudinal-data.md)
- [Endpoint Cohorts](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/endpoint-cohorts.md): Transformation file of FinnGen Endpoint file output from Endpointter
- [Minimum phenotype data (before R11)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minimum-and-minimum-longitudinal-data.md)
- [Cohort data (before R11)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/cohort-data.md)
- [Other register data files in Sandbox](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers.md)
- [Register of Congenital Malformations](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/the-register-of-congenital-malformations.md)
- [Finnish Registry for Kidney Diseases](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-registry-for-kidney-diseases.md)
- [Reproductive history data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/reproductive-history-data.md)
- [Finnish Cancer Registry: Cervical cancer screening](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-cancer-registry-cervical-cancer-screening.md)
- [Finnish Cancer Registry: Breast cancer screening](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-cancer-registry-breast-cancer-screening.md)
- [Finnish Cancer Registry: Detailed cancer data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-cancer-registry-detailed-cancer-data.md)
- [Finnish Register of Visual Impairment](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/the-finnish-register-of-visual-impairment.md)
- [Parental cause of death data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/parental-cause-of-death-data.md)
- [Ejection fraction data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/ejection-fraction-data.md)
- [Finnish National Infectious Disease Register](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/infectious-disease-registry-covid-19.md)
- [Finnish National Vaccination Register](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-national-vaccination-registry.md)
- [Covid-19 primary care data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/covid-19-primary-care-data.md)
- [Blood donor data from the Finnish Red Cross Blood Service (FRCBS)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/blood-donor-data-from-the-finnish-red-cross-blood-service-frcbs.md)
- [Dental data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/dental-data.md)
- [Socioeconomic data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/socioeconomic-data.md)
- [Finnish National HIV Register](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-national-hiv-register.md)
- [Finnish National Diabetes Register](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-national-diabetes-register.md)
- [Hilmo and avohilmo extended data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/hilmo-and-avohilmo-extended-data.md): Details on the extended Hilmo and Avohilmo data containing anthropometric measures, smoking an alcohol use, blood pressure measurements and long-term (chronic) conditions.
- [Task Force disease related data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/task-force-disease-related-data.md)
- [Harmonized Data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data.md)
- [Harmonized biologic medications dataset](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data/harmonized-biologic-medications-dataset.md)
- [Smoking Data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data/smoking-data.md)
- [Height/weight/BMI Data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data/height-weight-bmi-data.md): Weight, height, and BMI measurements harmonized from FinnGen registers (March 2026).
- [Omics data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data.md)
- [Proteomics](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics.md): A summary of the proteomic data available so far in FinnGen is provided below. For additional information, please check the corresponding subpages (e.g., Expansion area 5 and FinnGen 3).
- [Expansion Area 5 proteomics data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/expansion-area-5-proteomics-data.md)
- [FinnGen 3 proteomics data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data.md)
- [First batch](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data/first-batch.md)
- [Second batch](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data/second-batch.md)
- [Batch 1+2 harmonized data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data/batch-1+2-harmonized-data.md)
- [Metabolomics](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/metabolomics.md)
- [NMR Nightingale Health](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/metabolomics/nmr-nightingale-health.md)
- [Metabolon](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/metabolomics/metabolon.md)
- [Single-cell transcriptomics and immune profiling](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/single-cell-transcriptomics-and-immune-profiling.md)
- [High-content cell imaging (Blood Cell Painting)](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/high-content-cell-imaging-blood-cell-painting.md)
- [Full blood counts and clinical chemistry](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/omics-data/full-blood-counts-and-clinical-chemistry.md)
- [Hospital administered medications](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/hospital-administered-medications.md)
- [Whole exome sequencing (WES) data](https://docs.finngen.fi/finngen-data-specifics/red-library-data-individual-level-data/whole-exome-sequencing-wes-data.md)
- [Green Library Data (aggregate data)](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data.md)
- [What is "Green" Data?](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/what-is-green-data.md)
- [Accessing Green Data](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/how-can-you-download-green-data.md)
- [Other analyses available](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available.md)
- [Colocalizations in FinnGen](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations.md)
- [Colocalization in FinnGen prior to DF13](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations/colocalization-in-finngen-prior-to-df13.md): How colocalization was done before the change to coloc-susie
- [Autoreporting – information on overlaps](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/autoreporting-information-of-overlaps.md)
- [HLA](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/hla.md)
- [LoF burden test](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/lof-burden-test.md)
- [Meta-analyses](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/meta-analyses.md)
- [Core analysis results files](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files.md)
- [Recessive GWAS results format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/recessive-gwas-results-format.md): R12 recessive results file format
- [Variant annotation file format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/variant-annotation-file-format.md)
- [Genotype cluster plots format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/genotype-cluster-plots-format.md)
- [GWAS results format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/gwas-results-format.md)
- [Finemapping results format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/finemapping-results-format.md): Descriptions of the contents and formats of the finemapping pipeline output files
- [Colocalization results format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/colocalization-results-format.md)
- [Results format in colocalization before DF13](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/colocalization-results-format/results-format-in-colocalization-before-df13.md): Results format for legacy colocalization pipeline
- [Autoreporting results format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/autoreporting-results-format.md)
- [Sex-specific GWAS results format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/sex-specific-gwas-results-format.md)
- [UKBB-FinnGen meta-analysis file formats](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/ukbb-finngen-meta-analysis-file-formats.md)
- [Pairwise endpoint genetic correlation format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/pairwise-endpoint-genetic-correlation-format.md)
- [Heritabilities](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/heritabilities.md)
- [Coding variant associations format](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/coding-variant-associations-format.md)
- [HLA association results](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/hla-association-results.md)
- [Proteomics results](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/proteomics-results.md)
- [Coding variant results including CHIP EWAS (Exome-Wide Association Scan)](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/chip-gwas.md)
- [Kanta lab association results v1](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/kanta-lab-association-results-v1.md)
- [Conditional analysis results](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/conditional-analysis-results.md)
- [Disease Specific Task Forces and Interest groups](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups.md): One of the main focuses in FinnGen 3 is to deepen our understanding of the factors contributing to disease trajectories. This work is carried out by disease specific task forces.
- [Inflammatory bowel disease (IBD) Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force.md)
- [Inflammatory bowel disease (IBD) combined phenotype table](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force/inflammatory-bowel-disease-ibd-combined-phenotype-table.md)
- [Inflammatory bowel disease (IBD) SNOMED codes data](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force/inflammatory-bowel-disease-ibd-snomed-codes-data.md)
- [Inflammatory bowel disease (IBD) modified montreal data](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force/inflammatory-bowel-disease-ibd-modified-montreal-data.md)
- [Inflammatory bowel disease (IBD) time to operation & refined disease start data](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force/inflammatory-bowel-disease-ibd-time-to-operation-and-refined-disease-start-data.md)
- [Kidney Diseases Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/kidney-diseases-task-force.md)
- [Kidney diseases Task Force Refined phenotypes](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/kidney-diseases-task-force/kidney-diseases-task-force-refined-phenotypes.md)
- [Eye Diseases (age-related macular degeneration AMD) Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/eye-diseases-age-related-macular-degeneration-amd-task-force.md)
- [OCT image and visual acuity data](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/eye-diseases-age-related-macular-degeneration-amd-task-force/oct-image-and-visual-acuity-data.md)
- [Rheumatic Diseases Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force.md)
- [Finnish Rheumatology Quality Register](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force/finnish-rheumatology-quality-register.md)
- [Finnish Rheumatology Quality Register Medications](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force/finnish-rheumatology-quality-register-medications.md)
- [Rheumatic diseases Task Force Refined phenotypes](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force/rheumatic-diseases-task-force-refined-phenotypes.md)
- [Pulmonary Diseases Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/pulmonary-diseases-task-force.md)
- [Pulmonary diseases Task Force Refined phenotypes](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/pulmonary-diseases-task-force/pulmonary-diseases-task-force-refined-phenotypes.md)
- [Spirometry data (Pulmonary Task Force)](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/pulmonary-diseases-task-force/spirometry-data-pulmonary-task-force.md)
- [Alzheimer's Disease Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/alzheimers-disease-task-force.md)
- [Pilot quantitative data from brain MRI images (Alzheimer's disease)](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/alzheimers-disease-task-force/pilot-quantitative-data-from-brain-mri-images-alzheimers-disease.md)
- [Metabolic diseases Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/metabolic-diseases-task-force.md): Chairs: Teemu Niiranen (University of Turku), Michael Holmes (Genentech)
- [Parkinson's disease Task Force](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/parkinsons-disease-task-force.md): Chairs: Britney Milkovich (Abbvie), Mary Pat Reeve (FinnGen)
- [Parkinson's disease Task Force Refined phenotypes](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/parkinsons-disease-task-force/parkinsons-disease-task-force-refined-phenotypes.md)
- [Atopic Dermatitis Interest group](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/atopic-dermatitis-interest-group.md)
- [Heart Failure Interest group](https://docs.finngen.fi/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/heart-failure-interest-group.md): Chair: Jonathan Chung (Novartis), Emily Holzinger (BMS)
- [Expansion Area 3 (EA3) studies](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects.md)
- [EA3 study: Fatty liver disease study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-fatty-liver-disease-project-and-data-in-sandbox.md)
- [EA3 study: Age-related macular degeneration study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-age-related-macular-degeneration-project-and-data-in-sandbox.md)
- [EA3 study: Women's health studies](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies.md)
- [EA3 study: Women’s health – Endometriosis and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies/ea3-study-womens-health-endometriosis-study-variables.md)
- [EA3 study: Human papilloma virus-related gynecological lesions, and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies/ea3-womens-health-human-papilloma-virus-related-gynecological-lesions-study-and-data.md)
- [EA3 study: Women’s health – PCOS and infertility study, and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies/ea3-study-womens-health-female-infertility-and-pcos-study-variables.md)
- [EA3 study: Diabetic Kidney Disease and Rare Kidney Disease study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-diabetes-rkd-study-variables.md)
- [EA3 study: Oncology studies](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies.md)
- [EA3 study: Oncology – Breast cancer study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies/ea3-study-breast-cancer-study-variables.md)
- [EA3 study: Oncology –Prostate cancer study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies/ea3-study-prostate-cancer-study-variables.md)
- [EA3 study: Oncology – Ovarian cancer study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies/ea3-study-ovarian-cancer-study-variables.md)
- [EA3 study: Pulmonary diseases (IPF, asthma and COPD) study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-pulmonology-study-variables.md)
- [EA3 study: Immune-mediated diseases](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-immune-mediated-diseases.md)
- [EA3 study: Heart Failure study and data in Sandbox](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-heart-failure-variables.md)
- [FinnGen EA3 leads](https://docs.finngen.fi/finngen-data-specifics/expansion-area-3-ea3-projects/finngen-ea3-leads.md)
- [Working in the Sandbox](https://docs.finngen.fi/working-in-the-sandbox.md)
- [How to get started with Sandbox](https://docs.finngen.fi/working-in-the-sandbox/how-to-get-started-with-sandbox.md)
- [What is Sandbox and what can you do there](https://docs.finngen.fi/working-in-the-sandbox/uniqueness-of-sandbox-in-providing-a-secure-environment-to-access-individual-level-data.md)
- [What do we mean by "red" and "green" data?](https://docs.finngen.fi/working-in-the-sandbox/what-do-we-mean-by-red-and-green-data.md)
- [General workflows for the most common analyses](https://docs.finngen.fi/working-in-the-sandbox/general-workflows-for-the-most-common-analyses.md)
- [Quirks and Features](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features.md)
- [Managing your files in Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/managing-your-files-in-sandbox.md)
- [Navigating the Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/navigating-the-sandbox.md)
- [How to save Sandbox window configuration](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-save-sandbox-window-configuration.md)
- [Copying and pasting in and out of your IVM](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/copying-and-pasting-in-and-out-of-your-ivm.md)
- [How to report issues from within the Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-report-bugs.md)
- [Sharing individual-level data within the Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/sharing-individual-level-data-within-the-sandbox.md)
- [How to download results from your IVM](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-download-results-from-your-ivm.md)
- [Sandbox download requests – rules and examples for minimum N](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-download-results-from-your-ivm/sandbox-download-requests-rules-and-examples-for-minimum-n.md)
- [Keyboard combinations](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/keyboard-combinations.md)
- [Running analyses in your IVM vs. Pipelines](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/difference-between-running-things-in-your-ivm-vs.-pipelines.md)
- [Timeouts and saving your work (backups, github)](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/timeouts-and-saving-your-work-backups-github.md)
- [Install R and Python packages from the local Sandbox repository](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/r-and-python-local-repositories-in-finngen-sandbox.md)
- [How to install GNU Debian package](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-install-gnu-debian-package.md)
- [How to upload your own files to IVM via /finngen/green](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-upload-to-your-own-ivm-via-finngen-green.md)
- [How to remove files from /finngen/green](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-remove-files-from-finngen-green.md)
- [Using Sandbox as a Chrome application (full screen mode)](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/using-sandbox-as-a-chrome-application-full-screen-mode.md)
- [How to reset your finngen.fi account password](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-reset-your-finngen.fi-account-password.md)
- [Sandbox IVM tool request handling policy](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/sandbox-ivm-tool-request-handling-policy.md)
- [Docker images](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/docker-images.md)
- [How to get a new Docker image to Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/docker-images/how-to-get-a-new-docker-image-to-sandbox.md)
- [How to mount data into Docker container image](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/docker-images/how-to-mount-data-into-docker-container-image.md)
- [Containers available to Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/docker-images/containers-available-to-sandbox.md)
- [Containers with user customized tool sets](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/docker-images/packages-conflicting-other-packages-in-current-ivm.md)
- [How to write a Docker file](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/docker-images/how-to-write-a-docker-file.md)
- [Anaconda Python environment in the Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/docker-images/anaconda-python-environment-in-the-sandbox.md)
- [Python Virtual Environment in Sandbox](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/python-virtual-environment-in-sandbox.md)
- [How to shut down your IVM](https://docs.finngen.fi/working-in-the-sandbox/quirks-and-features/how-to-shut-down-your-ivm.md)
- [Which tools are available?](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available.md)
- [FinnGen exome query tool](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/finngen-exome-query-tool.md)
- [Custom GWAS tools](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled.md)
- [Custom GWAS command line (CLI) tool](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled/custom-gwas-command-line-cli-tool.md)
- [Custom GWAS CLI Binary mode](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled/custom-gwas-command-line-cli-tool/custom-gwas-cli-binary-mode.md)
- [Custom GWAS CLI Quantitative mode](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled/custom-gwas-command-line-cli-tool/custom-gwas-cli-quantitative-mode.md)
- [How to make your summary stats viewable in a PheWeb-style?](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled/how-to-set-up-a-pheweb-browser-for-summary-statistics.md)
- [Finemapping of Custom GWAS analyses](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled/finemapping-of-custom-gwas-analyses.md)
- [PheWeb Users Input Validator tool](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled/pheweb-users-input-validator-tool.md)
- [Conditional analysis of Custom GWAS analyses](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/untitled/conditional-analysis-of-custom-gwas-analyses.md)
- [Pipelines tool](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/pipelines.md): Information about the Sandbox Pipelines tool
- [Pre-installed Linux tools](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/unix-tools.md)
- [PGS Browser](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/pgs-browser.md)
- [Lmod Linux tools](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/lmod-linux-tools.md)
- [Anaconda Python module with ready set of scientific packages](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/anaconda-python-module-with-ready-set-of-scientific-packages.md)
- [Python packages](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/python-packages.md)
- [R packages](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/r-libraries.md)
- [Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas.md)
- [Quick guide](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide.md)
- [Introduction to OHDSI, OMOP CDM and Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/introduction-to-ohdsi-omop-cdm-and-atlas.md)
- [From research question to concepts and cohort building](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/from-research-question-to-concepts-and-cohort-building.md)
- [Using Atlas in Sandbox](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/using-atlas-in-sandbox.md)
- [Examples on cohort building with Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/examples-on-cohort-building-with-atlas.md)
- [Detailed guide](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide.md)
- [Atlas data model](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/atlas-data-model.md)
- [Standard and non-standard codes](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/code-sets-in-atlas.md)
- [How to define a cohort in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas.md)
- [Select FinnGen data release in Atlas for Search](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/selecting-configuration-in-atlas.md)
- [How to define a simple ICD case-control cohort in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas.md)
- [Define a simple ICD Concept Set in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas/define-a-simple-icd-concept-set-in-atlas.md)
- [Define a simple ICD case cohort in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas/define-a-simple-icd-case-cohort-in-atlas.md)
- [Define a simple ICD control cohort in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas/define-a-simple-icd-control-cohort-in-atlas.md)
- [Concept Sets](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets.md)
- [Create Concept Sets using descendants](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/selecting-descendants-for-a-concept-set-in-atlas.md)
- [Exclude and Remove codes from Concept Set](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/exclude-and-remove-codes-from-concept-set.md)
- [Simplify Concept Sets that use standard code descendants](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/simplify-concept-sets-that-use-standard-code-descendants.md)
- [Create Concept Sets using equivalent standard and non-standard codes](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/find-mapped-equivalents-for-standard-and-non-standard-codes-in-atlas.md)
- [View standard code hierarchy in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/viewing-the-hierarchy-of-standard-snomed-codes-in-atlas.md)
- [Cohort Definitions](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions.md)
- [Using the Death register in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/using-the-death-register-in-atlas.md)
- [Filtering by clinical registries in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/filter-by-clinical-registries-in-atlas.md)
- [Filtering by demographic criteria in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/filtering-by-demographic-criteria-in-atlas.md)
- [Defining exit rules for a cohort in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/defining-exit-rules-for-a-cohort-in-atlas.md)
- [Selecting the correct box in Atlas for events and medical codes](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/mapping-between-atlas-registries-and-medical-codes.md)
- [How to export FinnGen IDs from Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-do-you-export-finngen-ids-for-an-analysis-cohort.md)
- [Downstream analyses after the Atlas cohorts are created](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/downstream-analyses-after-the-atlas-cohorts-are-created.md)
- [Data Release Summary Statistics in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/atlas-data-sources.md)
- [Cohort Summary Statistics in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-characterizations-in-atlas.md)
- [Time-dependent Cohort Summary Statistics in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-characterizations-in-atlas/interpreting-the-results-of-feature-analysis-in-atlas.md)
- [Event inclusion in Cohort Summary Statistics in Atlas](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-characterizations-in-atlas/improving-cohorts-using-cohort-characterizations-tool.md)
- [Cohort Pathways](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-pathways.md)
- [BigQuery (relational database)](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/bigquery-relational-database.md)
- [Atlas vs BigQuery cohorts](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/atlas-vs-bigquery-cohorts.md)
- [Genotype Browser](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/genotype-browser.md)
- [Jupyter](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/jupyter.md)
- [Cohort Operations tool (CO)](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co.md)
- [Upload cohorts to CO](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/upload-cohorts-to-co.md)
- [Combine cohorts with CO](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/combine-cohorts-with-co.md)
- [Operate on Atlas cohorts and data with entries and exit events](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/modifying-atlas-cohort-with-co.md)
- [Explore code and endpoint enrichments with CO (CodeWAS)](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/explore-code-and-endpoint-enrichments-with-co.md)
- [Explore endpoint overlaps with CO](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/explore-endpoint-overlaps-with-co.md)
- [Compare custom endpoint to FinnGen endpoint with CO](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/compare-custom-endpoint-to-finngen-endpoint-with-co.md)
- [Launch custom GWAS with CO](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/launch-custom-gwas-with-co.md)
- [Export FinnGen IDs using CO](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/export-finngen-ids-using-co.md)
- [Understanding phenotypic overlaps using CO](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/understanding-phenotypic-overlaps-using-co.md)
- [Trajectory Visualization Tool (TVT)](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt.md)
- [Running TVT](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt.md)
- [Filtering timelines with TVT](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/filtering-timelines-with-tvt.md)
- [Reordering timelines with TVT](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/reordering-timelines-with-tvt.md)
- [Clustering timelines with TVT](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/clustering-timelines-with-tvt.md)
- [Viewing TVT results](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/viewing-tvt-results.md)
- [Viewing Atlas, CO, and Genotype cohorts in TVT](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/viewing-atlas-co-and-genotype-cohorts-in-tvt.md)
- [Exporting cohorts from TVT](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/exporting-cohorts-from-tvt.md)
- [TVT help page](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/tvt-help-page.md)
- [LifeTrack](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/lifetrack.md)
- [Miscellaneous helper scripts/tools](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools.md)
- [Tool to annotate variants with RSIDs](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids.md)
- [Proper translations of medical, service sector and provider codes](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/r-functions-to-translate-medical-codes.md): Utilizing R fuctions from FinnGenUtilsR
- [BigQuery Connection – R](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r.md)
- [Case study – All register data for a person](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-all-register-data-for-a-person.md)
- [Case study – UpSet plot](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-upset-plot.md)
- [Case study – Tornado plot](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-tornado-plot.md)
- [Case study – defining simple cohorts using medical codes for running case-control GWAS](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-defining-simple-cohorts-using-medical-codes-for-running-case-control-gwas.md)
- [BigQuery Connection - Python](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1.md)
- [BigQuery Python - Downstream analysis - Active Ingredient - Bar plot](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-downstream-analysis-active-ingredient-bar-plot.md)
- [BigQuery Python - Case Study - Sex different - Tornado plot](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-case-study-sex-different-tornado-plot.md)
- [BigQuery Python - Case Study - Comorbidity - Upset plot](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-case-study-comorbidity-upset-plot.md)
- [BigQuery Python - Case Study - Patient Timeline - Scatter plot](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-case-study-patient-timeline-scatter-plot.md)
- [Sandbox internal API for software developers](https://docs.finngen.fi/working-in-the-sandbox/which-tools-are-available/sandbox-internal-api-for-software-developers.md)
- [Working with Phenotype Data](https://docs.finngen.fi/working-in-the-sandbox/working-with-phenotype-data.md)
- [Variant PheWas](https://docs.finngen.fi/working-in-the-sandbox/working-with-phenotype-data/variant-phewas.md)
- [How to select controls for your cases](https://docs.finngen.fi/working-in-the-sandbox/working-with-phenotype-data/how-to-select-controls-for-your-cases.md)
- [Using the R libraries to look at Phenotype data](https://docs.finngen.fi/working-in-the-sandbox/working-with-phenotype-data/using-the-r-libraries-to-look-at-phenotype-data.md)
- [How to check case counts from the data](https://docs.finngen.fi/working-in-the-sandbox/working-with-phenotype-data/how-to-check-case-counts-from-the-data.md)
- [Creating your own user-defined endpoint](https://docs.finngen.fi/working-in-the-sandbox/working-with-phenotype-data/creating-your-own-user-defined-endpoint.md)
- [Working with Genotype Data](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data.md)
- [Genotype Browser how to](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/genotype-browser.md)
- [Cluster Plots](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/cluster-plots.md)
- [ClusterPlot viewer V3C](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/install-clusterplot-viewer-v3c.md)
- [Rare Variant Calling in V3C](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/rare-variant-calling-in-v3c.md)
- [Create map of allele](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/untitled.md)
- [Genotypes from VCF files](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/genotypes-from-vcf-files.md)
- [Variant PheWas](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/variant-phewas.md)
- [Interpreting rare-variant analysis results](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/interpreting-rare-variant-analysis-results.md)
- [Tools for geno-pheno explorations](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/tools-for-geno-pheno-explorations.md)
- [Example: transferring data from Genotype Browser to LifeTrack](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/tools-for-geno-pheno-explorations/example-transferring-data-from-genotype-browser-to-lifetrack.md)
- [Example: Visualizing Genotype Browser output data with TVT](https://docs.finngen.fi/working-in-the-sandbox/working-with-genotype-data/tools-for-geno-pheno-explorations/example-visualizing-genotype-browser-output-data-with-tvt.md)
- [Running analyses in Sandbox](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox.md)
- [Pipelines tool instructions](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions.md): This page contains instructions for the general use of pipelines
- [How to use the Pipelines tool](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-use-the-pipelines-area.md): This page describes how to use the sandbox Pipelines tool to submit analyses to the cloud and see their status
- [How to submit a pipeline from the command line (finngen-cli)](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-submit-a-pipeline-from-a-command-line.md)
- [Sandbox paths and pipeline mappings](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/sandbox-path-and-pipeline-mappings.md): A list of folders accessible in sandbox and their full bucket paths and mappings
- [Pipelines is based on Cromwell and WDL](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/pipelines-is-based-on-cromwell-and-wdl.md)
- [Tips on how to find a pipeline job ID](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/tips-on-how-to-find-a-pipeline-job-id.md)
- [If your pipeline job fails](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/if-your-pipeline-job-fails.md)
- [Using Google Life Sciences API in Sandbox](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/using-google-life-sciences-api-in-sandbox.md)
- [How to run survival analyses](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-survival-analyses.md)
- [How to create custom endpoint using bigquery: example](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-create-custom-endpoint-using-bigquery-example.md)
- [How to run genome-wide association studies (GWAS)](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas.md)
- [How to run GWAS using REGENIE](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-regenie.md): Instructions for running GWAS in FinnGen sandbox
- [Running quantitative GWAS with REGENIE](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/running-quantitative-gwas-with-regenie.md)
- [How to run Conditional Analysis](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis.md)
- [Unmodifiable Conditional Analysis pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis/unmodifiable-conditional-analysis-pipeline.md)
- [Unmodifiable Conditional Analysis Custom Regions Pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis/unmodifiable-conditional-analysis-custom-regions-pipeline.md)
- [Modifiable Conditional Analysis Custom Regions Pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis/modifiable-conditional-analysis-custom-regions-pipeline.md)
- [How to run GWAS using SAIGE](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-saige.md)
- [Adding new covariates in GWAS using REGENIE and SAIGE](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/adding-new-covariates-in-gwas-using-regenie-and-saige.md)
- [How to run GWAS using plink2 (for unrelated individuals only)](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-plink2-for-unrelated-individuals-only.md)
- [How to run GWAS using REGENIE survival models](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-regenie-survival-models.md)
- [How to run GWAS using GATE (survival models)](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-gate-survival-models.md)
- [How to run trajGWAS](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-trajgwas.md)
- [How to run GWAS using the REGENIE unmodifiable pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-the-regenie-unmodifiable-pipeline.md): This page describes how to run a REGENIE GWAS analysis using the FinnGen unmodifiable pipeline
- [How to run an interaction GWAS using the REGENIE unmodifiable pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-an-interaction-gwas-using-the-regenie-unmodifiable-pipeline.md): This page describes how to run an interaction GWAS analysis using the FinnGen unmodifiable interaction REGENIE pipeline
- [How to run survival analysis using GATE unmodifiable pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-survival-analysis-using-gate-unmodifiable-pipeline.md): How to run survival analysis using GATE unmodifiable pipeline
- [How to run GWAS on imputed HLA alleles using Regenie](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-on-imputed-hla-alleles-using-regenie.md)
- [How to run finemapping pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-finemapping-pipeline.md): Pipelines for finemapping of GWAS results using FINEMAP and SuSiE.
- [Unmodifiable Finemapping pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-finemapping-pipeline/unmodifiable-finemapping-pipeline.md): How to run finemapping with SuSiE and FINEMAP with the unmodifiable pipeline
- [Modifiable Finemapping pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-finemapping-pipeline/modifiable-finemapping-pipeline.md): How to manually run finemapping with SuSiE and FINEMAP with the provided workflows
- [How to run colocalization pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-colocalization-pipeline.md): Describes how to run the new colocalization pipeline with coloc susie package
- [How to run the LDSC unmodifiable pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-ldsc-pipeline.md)
- [How to run PRS pipeline](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-prs.md)
- [How to calculate PRS weights for FinnGen data](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/how-to-calculate-prs-weights-for-finngen-data.md)
- [Managing memory in Sandbox and data filtering tips](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/managing-memory-in-sandbox-and-data-filtering-tips.md)
- [Billing information and where to find more details](https://docs.finngen.fi/working-in-the-sandbox/billing-information-and-where-to-find-more-details.md)
- [Monitoring Sandbox costs by Sandbox billing report](https://docs.finngen.fi/working-in-the-sandbox/billing-information-and-where-to-find-more-details/monitoring-sandbox-costs-by-sandbox-billing-report.md)
- [Monitoring Sandbox costs directly from your Google billing account](https://docs.finngen.fi/working-in-the-sandbox/billing-information-and-where-to-find-more-details/monitoring-sandbox-costs-directly-from-your-google-billing-account.md)
- [Working outside the Sandbox](https://docs.finngen.fi/working-outside-the-sandbox.md)
- [Risteys](https://docs.finngen.fi/working-outside-the-sandbox/risteys-as-an-option-for-browsing-endpoints.md)
- [Endpoint Browser](https://docs.finngen.fi/working-outside-the-sandbox/endpoint-browser.md)
- [PheWeb](https://docs.finngen.fi/working-outside-the-sandbox/link-to-how-to-use-pheweb.md)
- [Volcano plots with LAVAA](https://docs.finngen.fi/working-outside-the-sandbox/link-to-how-to-use-pheweb/volcano-plots-with-lavaa.md)
- [Meta-analysis PheWeb(s)](https://docs.finngen.fi/working-outside-the-sandbox/meta-analysis-phewebs.md)
- [Coding variant browser](https://docs.finngen.fi/working-outside-the-sandbox/coding-variant-browser.md)
- [Multiple Manhattan Plot (MMP)](https://docs.finngen.fi/working-outside-the-sandbox/multiple-manhattan-plot-mmp.md)
- [How to prepare an input file for MMP](https://docs.finngen.fi/working-outside-the-sandbox/multiple-manhattan-plot-mmp/how-to-prepare-an-input-file-for-mmp.md)
- [How to use MMP](https://docs.finngen.fi/working-outside-the-sandbox/multiple-manhattan-plot-mmp/how-to-use-mmp.md)
- [LD browser](https://docs.finngen.fi/working-outside-the-sandbox/ld-browser.md)
- [Green library data](https://docs.finngen.fi/working-outside-the-sandbox/green-library-data.md)
- [Publishing FinnGen results](https://docs.finngen.fi/publishing-finngen-results.md)
- [Preparing manuscripts or conference abstracts](https://docs.finngen.fi/publishing-finngen-results/how-to-site-finngen.md)
- [The 1-year “Exclusivity Period” Policy](https://docs.finngen.fi/publishing-finngen-results/genemal-policy-of-1-yr-exclusivity-period.md)
- [List of Publications using FinnGen Data](https://docs.finngen.fi/publishing-finngen-results/link-to-satellite-and-other-example-papers-published-on-finngen-data.md)
- [How to share GWAS summary statistics with FinnGen community](https://docs.finngen.fi/publishing-finngen-results/how-to-share-gwas-summary-statistics.md)
- [How to publish GWAS summary statistics](https://docs.finngen.fi/publishing-finngen-results/how-to-publish-gwas-summary-statistics.md)
- [Public Result Releases](https://docs.finngen.fi/publishing-finngen-results/data-releases.md)
- [FAQ](https://docs.finngen.fi/faq.md)
- [FinnGen Spin Offs](https://docs.finngen.fi/faq/finngen-spin-offs.md)
- [FinnGen access and accounts](https://docs.finngen.fi/faq/about-finngen-access-and-accounts.md)
- [How do I apply for data access?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/where-do-i-apply-for-data-access.md)
- [What is "red" or "green" data?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/do-i-need-red-or-green-data-access.md)
- [I already have green data access, how do I apply for red data access?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/if-i-already-have-green-data-access-how-do-i-apply-for-red.md)
- [How do I enable two-factor authentication (2FA)?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-do-i-enable-two-factor-authentication.md)
- [I cannot access my FinnGen account?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/cant-access-your-finngen-account.md)
- [How to reset account credentials](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-to-reset-account-credentials.md)
- [What to do if you suspect your account has been compromised](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/what-to-do-if-you-suspect-your-account-has-been-compromised.md)
- [Can't access your smartphone for 2FA?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/cant-access-your-smartphone-for-2fa.md)
- [How do I access the FinnGen members' area?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-do-i-access-finngen-sharepoints.md)
- [How do I access FinnGen All Sharepoint?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/finngen-all-sharepont-e-duuni-site-how-to-log-in-for-the-first-time.md)
- [How can I view existing analysis proposals?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-can-i-view-existing-analysis-proposals.md)
- [How can I join the FinnGen Slack?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/can-i-join-the-finngen-slack.md)
- [How do I join the FinnGen Teams group?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-do-i-join-the-finngen-teams-group.md): FinnGen uses Microsoft Teams to enable group work and the sharing of materials with its partner organisations.
- [How to apply SES sandbox access](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-to-apply-ses-sandbox-access.md)
- [How to apply for FinnGen\_FHRB Sandbox access](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-to-apply-for-finngen_fhrb-sandbox-access.md)
- [How to apply for FinnGen\_FSZ/BPD Sandbox access](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-to-apply-for-finngen_fsz-bpd-sandbox-access.md)
- [How to manage multiple google accounts?](https://docs.finngen.fi/faq/about-finngen-access-and-accounts/how-to-manage-multiple-google-accounts.md)
- [FinnGen data](https://docs.finngen.fi/faq/about-finngen-data.md): Questions related to retrieval and contents of FinnGen data.
- [What to do if I think I found a mistake in the data?](https://docs.finngen.fi/faq/about-finngen-data/i-think-i-found-a-mistake-in-the-longitudinal-data.md)
- [What are the field/column names in FinnGen?](https://docs.finngen.fi/faq/about-finngen-data/what-are-the-field-column-names-in-finngen.md)
- [What covariates are used in FinnGen's core GWAS analyses?](https://docs.finngen.fi/faq/about-finngen-data/what-covariates-are-used-in-finngens-core-gwas-analyses.md)
- [Does FinnGen have lab results available?](https://docs.finngen.fi/faq/about-finngen-data/untitled.md)
- [Does FinnGen have family and relatedness information available?](https://docs.finngen.fi/faq/about-finngen-data/does-sandbox-have-family-and-relatedness-information-available.md)
- [Where can I find a list of unrelated individuals in FinnGen?](https://docs.finngen.fi/faq/about-finngen-data/where-can-i-find-a-list-of-unrelated-individuals-in-finngen.md)
- [When moving from BCOR to .txt files, what does the column called "correlation" mean?](https://docs.finngen.fi/faq/about-finngen-data/untitled-1.md)
- [Is there really no participant birth year data?](https://docs.finngen.fi/faq/about-finngen-data/is-there-really-no-participant-birth-year-data-in-sandbox.md)
- [How do I calculate time between events?](https://docs.finngen.fi/faq/about-finngen-data/how-do-i-calculate-time-between-events.md)
- [Can I select only the columns needed for my analysis to import into RStudio?](https://docs.finngen.fi/faq/about-finngen-data/can-i-select-only-the-columns-needed-for-my-analysis-to-import-into-rstudio.md)
- [What is the difference is between LD-clumping and the Saige conditional analysis?](https://docs.finngen.fi/faq/about-finngen-data/what-is-the-difference-is-between-ld-clumping-and-the-saige-conditional-analysis.md)
- [Can I download all pairwise LD data across the genome at once?](https://docs.finngen.fi/faq/about-finngen-data/can-i-download-all-pairwise-ld-data-across-the-genome-at-once.md)
- [How to find latest data releases?](https://docs.finngen.fi/faq/about-finngen-data/how-to-find-latest-data-releases.md)
- [Why are there differences in the GWAS results between Data Freezes/Releases?](https://docs.finngen.fi/faq/about-finngen-data/why-are-there-differences-in-the-gwas-results-between-data-freezes-releases.md)
- [Citing FinnGen](https://docs.finngen.fi/faq/about-public-releases.md): Information regarding publicly available data and when data becomes publicly available.
- [How do I cite analysis using publicly available FinnGen results?](https://docs.finngen.fi/faq/about-public-releases/how-do-i-cite-an-analysis-that-used-publicly-available-finngen-data.md)
- [How do I cite FinnGen results that use individual level data?](https://docs.finngen.fi/faq/about-public-releases/how-do-i-cite-finngen-in-analyses-that-use-private-data.md)
- [Where can I find](https://docs.finngen.fi/faq/where-can-i-find.md)
- [COVID association results?](https://docs.finngen.fi/faq/where-can-i-find/covid-association-results.md)
- [Users' Meeting materials?](https://docs.finngen.fi/faq/where-can-i-find/users-meeting-slides.md)
- [A list of what coding variants are enriched in Finland?](https://docs.finngen.fi/faq/where-can-i-find/a-list-of-what-coding-variants-are-enriched-in-finland.md)
- [A comprehensive list of key file locations in FinnGen?](https://docs.finngen.fi/faq/where-can-i-find/a-comprehensive-list-of-key-file-locations-in-finngen.md)
- [Medical code translations?](https://docs.finngen.fi/faq/where-can-i-find/code-translations.md)
- [PheWeb](https://docs.finngen.fi/faq/about-pheweb.md): Questions about PheWeb data and available results.
- [What are QQ and Manhattan plots?](https://docs.finngen.fi/faq/about-pheweb/what-are-qq-and-manhattan-plots.md)
- [How can I access PheWeb?](https://docs.finngen.fi/faq/about-pheweb/how-do-i-get-access-to-pheweb.md)
- [Are fine-mapping results that available in PheWeb also available as flat files?](https://docs.finngen.fi/faq/about-pheweb/can-i-have-the-finemapping-results-available-in-pheweb-as-flat-files.md)
- [Do the autoreports report the 95% or 99% credible set?](https://docs.finngen.fi/faq/about-pheweb/do-the-autoreports-report-the-95-or-99-credible-set.md)
- [Registries](https://docs.finngen.fi/faq/about-registries.md): Questions about the biobanks from which FinnGen's data is acquired.
- [What do KELA reimbursement codes map to?](https://docs.finngen.fi/faq/about-registries/what-do-kela-reimbursement-codes-map-to.md)
- [What's the cutoff date for FinnGen data?](https://docs.finngen.fi/faq/about-registries/whats-the-cutoff-date-for-finngen-data.md)
- [Sandbox](https://docs.finngen.fi/faq/about-sandbox.md): Questions about the Sandbox environment.
- [What is the FinnGen Sandbox?](https://docs.finngen.fi/faq/about-sandbox/background-of-data-safety-and-link-to-more-details.md)
- [Why does my IVM freeze while loading data into R/Rstudio](https://docs.finngen.fi/faq/about-sandbox/why-does-my-ivm-freeze-while-loading-data-into-r-rstudio.md)
- [Where can I find tutorials and documentation on Sandbox?](https://docs.finngen.fi/faq/about-sandbox/where-can-i-find-tutorials-on-sandbox.md)
- [How do I get my own analysis code into Sandbox?](https://docs.finngen.fi/faq/about-sandbox/how-do-i-get-my-own-code-files-into-sandbox-1.md)
- [Where to ask for software you'd like to see in Sandbox](https://docs.finngen.fi/faq/about-sandbox/where-to-ask-for-software-youd-like-to-see-in-sandbox.md)
- [Can I share individual level data between different Sandbox users?](https://docs.finngen.fi/faq/about-sandbox/is-there-a-way-to-share-individual-level-data-between-different-sandbox-users.md)
- [Is there a sun grid engine for running long scripts?](https://docs.finngen.fi/faq/about-sandbox/is-there-a-sun-grid-engine-for-running-long-scripts.md)
- [How to clear browser cache after sandbox update](https://docs.finngen.fi/faq/about-sandbox/how-to-clear-browser-cache-after-sandbox-update.md)
- [How can I clean unused Docker containers from my /home/ivm/?](https://docs.finngen.fi/faq/about-sandbox/how-can-i-clean-unused-docker-containers-from-my-home-ivm.md)
- [Tool got stuck when opening from the Sandbox menu?](https://docs.finngen.fi/faq/about-sandbox/tool-got-stuck-when-opening-from-the-sandbox-menu.md)
- [How do I increase the window resolution on my IVM?](https://docs.finngen.fi/faq/about-sandbox/how-do-i-increase-the-window-resolution-on-my-ivm.md)
- [How can I view pdf, jpg and HTML files?](https://docs.finngen.fi/faq/about-sandbox/how-can-i-view-pdf-jpg-and-html-files.md)
- [My Sandbox job was killed - why?](https://docs.finngen.fi/faq/about-sandbox/my-sandbox-job-was-killed-why.md)
- [How to unzip files in the command line](https://docs.finngen.fi/faq/about-sandbox/how-to-unzip-files-in-the-command-line.md)
- [Why aren't my keyboard/shortcuts working in Sandbox like they do in my local computer?](https://docs.finngen.fi/faq/about-sandbox/why-arent-my-keyboard-shortcuts-working-in-sandbox-like-they-do-in-my-local-computer.md)
- [How to know if my pipeline job was failed due preemption of worker VM](https://docs.finngen.fi/faq/about-sandbox/how-to-know-if-my-pipeline-job-was-failed-due-preemption-of-worker-vm.md)
- [I cannot access the /finngen/red?](https://docs.finngen.fi/faq/about-sandbox/i-cannot-access-the-finngen-red.md)
- [Atlas](https://docs.finngen.fi/faq/about-atlas.md): Questions about using Atlas.
- [How to repeat a Risteys endpoint in Atlas?](https://docs.finngen.fi/faq/about-atlas/how-to-repeat-a-risteys-endpoint-in-atlas.md)
- [Can I use FinnGen endpoints like medical codes in Atlas?](https://docs.finngen.fi/faq/about-atlas/can-i-use-finngen-endpoints-like-medical-codes-in-atlas.md)
- [Risteys](https://docs.finngen.fi/faq/about-risteys.md): Questions about using Risteys.
- [Why is the case number dropping after the "Check pre-conditions, main-only, mode, ICD version" step?](https://docs.finngen.fi/faq/about-risteys/why-is-the-case-number-dropping-after-the-check-pre-conditions-main-only-mode-icd-version-step.md)
- [Endpoints](https://docs.finngen.fi/faq/about-endpoints.md): Questions related to FinnGen's endpoints and health outcomes available.
- [Where do I find the most recent list of FinnGen endpoints?](https://docs.finngen.fi/faq/about-endpoints/where-do-i-find-the-most-recent-list-of-finngen-endpoints.md)
- [What does it mean when an endpoint has “mode” at the end?](https://docs.finngen.fi/faq/about-endpoints/what-does-it-mean-when-an-endpoint-has-mode-at-the-end.md)
- [What scenario would cause an NA (missing data) entry rather than a zero?](https://docs.finngen.fi/faq/about-endpoints/what-scenario-would-cause-an-na-missing-data-entry-rather-than-a-zero.md)
- [Does it mean anything when a value is written as $!$ instead of NA?](https://docs.finngen.fi/faq/about-endpoints/does-it-mean-anything-when-a-value-is-written-as-usd-usd-instead-of-na.md)
- [Why is there an inconsistency between ICD10 code J84.1 (IPF) and J84.112?](https://docs.finngen.fi/faq/about-endpoints/why-is-there-an-inconsistency-between-icd10-code-j84.1-ipf-and-j84.112.md)
- [How are control endpoints calculated?](https://docs.finngen.fi/faq/about-endpoints/how-are-control-endpoints-calculated.md)
- [Can I get a list of FinnGen IDs by control group for my endpoint?](https://docs.finngen.fi/faq/about-endpoints/can-i-get-a-list-of-finngen-ids-by-control-group-for-my-endpoint.md)
- [What does Level C mean in the endpoints data table?](https://docs.finngen.fi/faq/about-endpoints/whats-level-c-in-the-endpoints-data-table.md)
- [What does the SUBSET\_COV field show?](https://docs.finngen.fi/faq/about-endpoints/what-does-the-subset_cov-field-show.md)
- [Why is there a "K." prefix on some endpoints?](https://docs.finngen.fi/faq/about-endpoints/why-is-there-a-k.-prefix-on-some-endpoints.md)
- [Why there are fewer endpoints going from R5 (N = 2,925) to R8 (N = 2,202)?](https://docs.finngen.fi/faq/about-endpoints/why-there-are-fewer-endpoints-going-from-r5-n-2-925-to-r8-n-2-202.md)
- [Should I include primary care registry (PRIM\_OUT) codes in my cohort definitions?](https://docs.finngen.fi/faq/about-endpoints/should-i-include-primary-care-registry-prim_out-codes-in-my-cohort-definitions.md)
- [I found BL\_AGE after FU\_END\_AGE in the endpoint data, how is it possible?](https://docs.finngen.fi/faq/about-endpoints/i-found-bl_age-after-fu_end_age-in-the-endpoint-data-how-is-it-possible.md)
- [Why do individuals who are not dead have death age in endpoint data?](https://docs.finngen.fi/faq/about-endpoints/why-individuals-who-are-not-dead-have-death-age-in-endpoint-data.md)
- [I found EVENT\_AGE after FU\_END\_AGE in endpoint data, how is it possible?](https://docs.finngen.fi/faq/about-endpoints/i-found-event_age-after-fu_end_age-in-endpoint-data-how-is-it-possible.md)
- [Pipelines](https://docs.finngen.fi/faq/about-pipelines.md): Questions about commonly used FinnGen pipelines.
- [Are there example SAIGE pipelines?](https://docs.finngen.fi/faq/about-pipelines/are-there-example-saige-pipelines.md)
- [How do I apply finemapping to my SAIGE results?](https://docs.finngen.fi/faq/about-pipelines/how-do-i-apply-finemapping-to-my-saige-results.md)
- [Why Pipelines is claiming that my files or folders are not in /finngen/red?](https://docs.finngen.fi/faq/about-pipelines/files-or-folders-not-existing-in-finngen-red.md)
- [Why does the GATE pipeline fail with no obvious reason](https://docs.finngen.fi/faq/about-pipelines/why-does-the-gate-pipeline-fail-with-no-obvious-reason.md): pipeline failure with convergence error related to covariates
- [For biobanks](https://docs.finngen.fi/faq/for-the-biobanks.md): Answers to questions biobank representatives may have about FinnGen.
- [How to apply for data return](https://docs.finngen.fi/faq/for-the-biobanks/how-to-apply-for-data-return.md)
- [Release Notes](https://docs.finngen.fi/release-notes.md)
- [Data Releases 2026](https://docs.finngen.fi/release-notes/data-releases-2026.md)
- [Data Releases 2025](https://docs.finngen.fi/release-notes/data-releases-2025.md)
- [Data Releases 2024](https://docs.finngen.fi/release-notes/data-releases-2024.md)
- [Data Releases 2023](https://docs.finngen.fi/release-notes/data-releases-2023.md)
- [Data Releases 2022](https://docs.finngen.fi/release-notes/data-releases-2022.md)
- [Data Releases 2021](https://docs.finngen.fi/release-notes/data-releases-2021.md)
- [Tool Catalog](https://docs.finngen.fi/tool-catalog.md)
- [Pheweb listing](https://docs.finngen.fi/tool-catalog/pheweb-listing.md): This page lists all operational pheweb browsers
- [Glossary](https://docs.finngen.fi/glossary.md)
- [User Support & Training](https://docs.finngen.fi/user-support.md)
- [Data Protection & Security](https://docs.finngen.fi/data-protection-and-security.md)
- [How do I report a data breach?](https://docs.finngen.fi/data-protection-and-security/how-do-i-report-a-data-breach.md)