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FinnGen Handbook
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  • Introduction
  • Where to begin
  • Background Concepts
  • FinnGen Data Specifics
  • Working in the Sandbox
    • How to get started with Sandbox
    • What is Sandbox and what can you do there
    • What do we mean by "red" and "green" data?
    • General workflows for the most common analyses
    • Quirks and Features
      • Managing your files in Sandbox
      • Navigating the Sandbox
      • How to save Sandbox window configuration
      • Copying and pasting in and out of your IVM
      • How to report issues from within the Sandbox
      • Sharing individual-level data within the Sandbox
      • How to download results from your IVM
      • Keyboard combinations
      • Running analyses in your IVM vs. Pipelines
      • Timeouts and saving your work (backups, github)
      • Install R and Python packages from the local Sandbox repository
      • How to install GNU Debian package
      • How to upload your own files to IVM via /finngen/green
      • How to remove files from /finngen/green
      • Using Sandbox as a Chrome application (full screen mode)
      • How to reset your finngen.fi account password
      • Sandbox IVM tool request handling policy
      • Docker images
      • Python Virtual Environment in Sandbox
      • How to shut down your IVM
    • Which tools are available?
    • Working with Phenotype Data
    • Working with Genotype Data
    • Running analyses in Sandbox
    • Billing information and where to find more details
  • Working outside the Sandbox
  • Publishing FinnGen results
  • FAQ
  • Release Notes
  • Tool Catalog
  • Glossary
  • User Support & Training
  • Data Protection & Security
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For the complete documentation index, see llms.txt. This page is also available as Markdown.
  1. Working in the Sandbox

Quirks and Features

In this section we will share the following:

  • Managing your files in Sandbox

  • Navigating the sandbox

  • How to save Sandbox window configuration

  • Copying and pasting in and out of your IVM

  • How to report issues from within the Sandbox

  • Sharing individual-level data within the Sandbox

  • How to download results from your IVM

  • Keyboard combinations

  • Running analyses in your IVM vs. Pipelines

  • Timeouts and saving your work (backups, github)

  • Install R and Python packages from the local Sandbox repository

  • How to install GNU Debian package

  • How to upload to your own IVM via /finngen/green

  • How to remove files from /finngen/green

  • Sandbox usage as Chrome application (full screen mode)

  • How to reset your finngen.fi account password

  • Sandbox IVM tool request handling policy

  • Docker images

  • Python Virtual Environment in Sandbox

  • How to shut down your IVM

PreviousGeneral workflows for the most common analyses
NextManaging your files in Sandbox

Last updated 3 months ago

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