# Modifiable Conditional Analysis Custom Regions Pipeline

## Summary

This pipeline is completely identical to the [unmodifiable version](/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis/unmodifiable-conditional-analysis-custom-regions-pipeline.md). The only difference here is an extra (optional) input:

* `conditional_analysis_custom.cov_file` Path to covariate file

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These results will not be automatically exported


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