> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions.md).

# Pipelines tool instructions

This set of pages has instructions for:

* [How to use the Pipelines tool](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-use-the-pipelines-area.md)
* [How to submit a pipeline from the command line](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-submit-a-pipeline-from-a-command-line.md)
* [Sandbox path and pipeline mappings](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/sandbox-path-and-pipeline-mappings.md)
* [Pipelines is based in Cromwell and WDL](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/pipelines-is-based-on-cromwell-and-wdl.md)
* [Tips on how to find a pipeline job ID](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/tips-on-how-to-find-a-pipeline-job-id.md)
* [If your pipeline job fails](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/if-your-pipeline-job-fails.md)