ClusterPlot viewer V3C
Last updated
Was this helpful?
Last updated
Was this helpful?
V3C is a graphical tool in Sandbox used for:
improving the automatic calls of rare variants
looking at batch variation
V3C runs on a text file that contains intensity values for many individuals in FinnGen. This individual-level intensity data is available only in Sandbox (in contrast to the cluster plot image files which can be downloaded from the green library). For instructions on locating the intensity file please see the section .
From Sandbox v10.3 onwards the Cluster Plots viewer is also provided within view. For more information on Cluster Plots and where to find cluster plots made from FinnGen data see the chapter.
You can also use V3C on a separate browser page in Sandbox IVM. To install it:
(After the initial installation, you can in future skip steps 1 and 2 to run the viewer.)
Copy the zip archive to your IVM:
cp /finngen/shared/v3c/20220403_122900/files/mpreeve/V3C_01042022.tar /home/ivm
tar cvf V3C_01042022.tar
cd FinnGen-Cluster-Plot
firefox finngen_plot.html