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FinnGen Handbook
  • Introduction
  • Where to begin
  • Background Concepts
  • FinnGen Data Specifics
  • Disease Specific Task Forces
  • Working in the Sandbox
    • How to get started with Sandbox
    • What is Sandbox and what can you do there
    • What do we mean by "red" and "green" data?
    • General workflows for the most common analyses
    • Quirks and Features
    • Which tools are available?
    • Working with Phenotype Data
      • Variant PheWas
      • How to select controls for your cases
      • Using the R libraries to look at Phenotype data
      • How to check case counts from the data
      • Creating your own user-defined endpoint
    • Working with Genotype Data
    • Running analyses in Sandbox
    • Billing information and where to find more details
  • Working outside the Sandbox
  • FAQ
  • Release Notes
  • Tool Catalog
  • Glossary
  • User Support
  • Data Protection & Security
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  1. Working in the Sandbox

Working with Phenotype Data

Topics of this section:

  • Variant PheWas

  • How to select controls for your cases

  • Using the R libraries to look at Phenotype data

  • How to check case counts from the data

  • Creating your own user-defined endpoint

PreviousSandbox internal API for software developersNextVariant PheWas

Last updated 7 months ago

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