Risteys
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is a useful web portal for understanding FinnGen . Risteys contains data from both and , making it easy to compare the data from both sources side-by-side.
Whereas FinnGen is enriched for diseases and contains 10% of the Finnish population, which is , FinRegistry is a population sample with ~7 million individuals with highly similar phenotype data to FinnGen but no genotype data.
Risteys is available to everyone at (no credentials or registration needed).
If you'd like to see more, please watch these demo videos
On Risteys you can look up any FinnGen endpoint and obtain:
Endpoint Definition (e.g. which ICD-10 codes make up the endpoint)
Upset plot detailing case counts by codes (opening from the link on the lower right corner near the Endpoint Definition box)
Table of case counts by codes (opening from the link on the lower right corner near the Endpoint Definition box)
Summary phenotype statistics for the endpoint in both FinnGen data and FinRegistry data (e.g. number of cases, age at first event)
Similar endpoints on Risteys: In addition, it is possible to navigate endpoints by a subset or superset of cases for the current endpoint.
Risteys also has a section showing the association between an exposure endpoint and death (FinRegistry data) and a Relationships between endpoints section presenting survival analysis results from FinRegistry and genetic analyses results from FinnGen.
Risteys of previous data releases can be found here:
A , , , and are found on Risteys website in the .
P(at 25min 23sec) including usage of Risteys.
Risteys Release 8 update in
New endpoint explainer in Risteys in
(R4, March 2020)
See also frequently asked questions about .
On top of the page, Risteys provides links to the and pages of the endpoint opened in Risteys. The is a tool to visualize hierarchy and relatedness between similar endpoints. The provides GWAS results for the endpoint..
(first version with FinnGen and FinRegistry data)
