{"version":1,"pages":[{"id":"NATxUH5Ukrq5jNWjHztN","title":"Introduction","pathname":"/","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"3nZRGekpNwsSu7BDkSdj","title":"Where to begin","pathname":"/where-to-begin...","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"36B8SvPbqvjrmpdIaWKi","title":"Quick guides","pathname":"/where-to-begin.../quick-guides","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"}]},{"id":"bcF65pExroOmzGm8dOvj","title":"New to FinnGen","pathname":"/where-to-begin.../quick-guides/new-to-finngen","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"},{"label":"Quick guides"}]},{"id":"8u0qjmw6AnvOt0unyQ43","title":"Green data users","pathname":"/where-to-begin.../quick-guides/green-data-users","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"},{"label":"Quick guides"}]},{"id":"aOEGR2f01r4PfpdA4FRt","title":"Red data users","pathname":"/where-to-begin.../quick-guides/red-data-users","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"},{"label":"Quick guides"}]},{"id":"IQqy90zcmRdybwjp2jni","title":"I'm new to FinnGen, where is the best place for me to start?","pathname":"/where-to-begin.../im-a-clinician-new-to-finngen-where-is-the-best-place-for-me-to-start","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"}]},{"id":"0OyEZMz3txypabUHYTuJ","title":"What kind of questions can I ask of FinnGen data?","pathname":"/where-to-begin.../what-kind-of-questions-can-i-ask-of-the-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"}]},{"id":"Bb4qO2Pmr5GlEZcTJQ3v","title":"How do I make a custom endpoint?","pathname":"/where-to-begin.../how-do-i-make-a-custom-endpoint","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"}]},{"id":"P1RtRE94FZlMIVjvByWK","title":"How do I run a GWAS of a phenotype I created myself?","pathname":"/where-to-begin.../how-do-i-run-a-gwas-of-a-phenotype-i-create-myself","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"}]},{"id":"JvbVAnl1BRKQ6aI7xlmp","title":"I'm interested in FinnGen rare variant phenotypes","pathname":"/where-to-begin.../im-interested-in-finngen-rare-variant-phenotypes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Where to begin"}]},{"id":"-MhYMPoTlF1hq41XxNuE","title":"Background Concepts","pathname":"/background-reading","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"-MhYMPoUiSpI505QY3og","title":"Basics of Genetics","pathname":"/background-reading/genetics-basics","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoXi0E5QqoVB1eF","title":"Linkage Disequilibrium (LD)","pathname":"/background-reading/linkage-disequilibrium-ld","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoV98SLIRtWwoMZ","title":"Genotype Imputation","pathname":"/background-reading/imputation","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoWKTJQd9Vsk7us","title":"Genotype Data Processing and Quality Control (QC)","pathname":"/background-reading/genotype-process","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoYZMwVq0cfHHIP","title":"GWAS Analysis","pathname":"/background-reading/gwas-analysis","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoebxVmfv_XUWMu","title":"P Values","pathname":"/background-reading/p-values","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"Mn4I19jHO4DTUH48SbxN","title":"GWAS Meta-analysis","pathname":"/background-reading/gwas-meta-analysis","siteSpaceId":"sitesp_cLEtR","icon":"chart-network","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"a0iJQsXkIS1MQA86Ake6","title":"Heritability and genetic correlations","pathname":"/background-reading/heritability-and-genetic-correlations","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPohe23IQXZEKhc2","title":"Finemapping","pathname":"/background-reading/finemapping","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"m9wxUVmKKmUXJdTqXVim","title":"Conditional analysis","pathname":"/background-reading/conditional-analysis","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPo_d4xhdREzeN4t","title":"Colocalization","pathname":"/background-reading/colocalization","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPogY3zRkM4HaBV8","title":"Using Polygenic Risk Scores","pathname":"/background-reading/using-prs-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoZ8wIEJ9cV1b68","title":"PheWAS analysis","pathname":"/background-reading/phewas-analysis-compared-to-gwas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"okgNj3Gfw2HLiVclE9Vz","title":"Survival analysis","pathname":"/background-reading/survival-analysis","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPodXsoVFS1FAk1B","title":"Longitudinal Data Analysis","pathname":"/background-reading/references-on-longitudinal-data-analysis-ohdsi-soren-brunak","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPobyCguAM4zWfjL","title":"GWAS Association to Biological Function","pathname":"/background-reading/gwas-association-to-biology","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoakkAuel2Ep_yO","title":"Genetic Data Resources outside FinnGen","pathname":"/background-reading/genetic-data-resources","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-Miuu16bCLpS4c-yJvot","title":"Getting Started with Unix","pathname":"/background-reading/how-to-get-started-with-unix","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPocMaHEBzEopdUk","title":"Getting Started with R","pathname":"/background-reading/how-to-get-started-with-r","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"QChT9LqrtWehhVnMknka","title":"Structure of the FinnGen project","pathname":"/background-reading/structure-of-the-finngen-project","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"oMZuBXX8iug5h6eO6KkB","title":"Finnish gene pool and health register data","pathname":"/background-reading/basics-of-what-is-unique-about-finnish-healthcare-and-health-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Background Concepts"}]},{"id":"-MhYMPoibVBUV0WdQSBU","title":"FinnGen Data Specifics","pathname":"/finngen-data-specifics","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"-MhYMPojxh0lwo0wpxOE","title":"FinnGen Data Freezes and Releases","pathname":"/finngen-data-specifics/finngen-data-freezes-and-releases","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"5hGy8Wks2WKGhROXxxhc","title":"Analysis proposals","pathname":"/finngen-data-specifics/about-analysis-proposals","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"WxiQaRNG2j92xg0n7g16","title":"What is a FinnGen analysis proposal and when do I need to submit one?","pathname":"/finngen-data-specifics/about-analysis-proposals/when-do-i-need-to-submit-an-analysis-proposal","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"iT3WghUsP04LYb4C91wt","title":"How do I submit an analysis proposal?","pathname":"/finngen-data-specifics/about-analysis-proposals/how-do-i-submit-an-analysis-proposal","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"NWuzBC0HrLWJ3bIvEdBG","title":"How are analysis proposals handled?","pathname":"/finngen-data-specifics/about-analysis-proposals/how-are-analysis-proposals-handled","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"m5cv5D0tXMovN8oj0Rv5","title":"What is a FinnGen bespoke analysis proposal and when do I need to submit one?","pathname":"/finngen-data-specifics/about-analysis-proposals/what-is-a-finngen-bespoke-analysis-proposal-and-when-do-i-need-to-submit-one","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"X90slPa4NbbpVhOO5or2","title":"How do I submit a bespoke analysis proposal?","pathname":"/finngen-data-specifics/about-analysis-proposals/how-do-i-submit-a-bespoke-analysis-proposal","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"kPnxiRvXdYsxQpvOHJSc","title":"How are bespoke analysis proposals handled?","pathname":"/finngen-data-specifics/about-analysis-proposals/how-are-bespoke-analysis-proposals-handled","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"VhBYh7d1159zet2MjhYj","title":"What is the difference between FinnGen analysis proposals and FinnGen bespoke analyses?","pathname":"/finngen-data-specifics/about-analysis-proposals/what-is-the-difference-between-finngen-analysis-proposals-and-finngen-bespoke-analyses","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"aWuOxOiEOTeNoN1bHzTI","title":"Existing analysis proposals","pathname":"/finngen-data-specifics/about-analysis-proposals/existing-analysis-proposals","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Analysis proposals"}]},{"id":"-MhYMPoyJ1ZkcB7OPsvU","title":"Finnish Health Registries and Medical Coding","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"-MhYMPozpiMiesm7-nFz","title":"Finnish health registries","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding/finnish-health-registers","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Finnish Health Registries and Medical Coding"}]},{"id":"WALyKQ1CKNqTXTqcsJoq","title":"Register data pre-processing","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding/register-data-pre-processing","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Finnish Health Registries and Medical Coding"}]},{"id":"-MhYMPpEhpltxJSdGXVw","title":"Data Masking/Blurring of Visit Dates","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding/data-masking-blurring-of-visit-dates","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Finnish Health Registries and Medical Coding"}]},{"id":"-MhYMPp-LK9bo37RUdyP","title":"International and Finnish Health Code Sets","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding/international-and-finnish-health-code-sets","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Finnish Health Registries and Medical Coding"}]},{"id":"ZKssqm7PjeFYaaH3PNWX","title":"More information on health code sets","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding/more-information-on-health-code-sets","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Finnish Health Registries and Medical Coding"}]},{"id":"PfKmnEOSpWqzwcjXQevN","title":"VNR code mapping to RxNorm","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding/vnr-code-mapping-to-rxnorm","siteSpaceId":"sitesp_cLEtR","description":"Details of VNR codes in finngen R6 mapped to standard RxNorm","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Finnish Health Registries and Medical Coding"}]},{"id":"-MhYMPp0qut2kFizSfFn","title":"Register code translation files","pathname":"/finngen-data-specifics/finnish-health-registers-and-medical-coding/where-to-find-the-translation-file-for-phenotype-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Finnish Health Registries and Medical Coding"}]},{"id":"-MhYMPp8uzr8j2AQCBQk","title":"Endpoints","pathname":"/finngen-data-specifics/endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"29mcs09w8j4JkEmSkFBn","title":"FinnGen clinical endpoints","pathname":"/finngen-data-specifics/endpoints/finngen-clinical-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"tcnGF2ImXuaP6RjtHwsY","title":"History of creating the FinnGen endpoints","pathname":"/finngen-data-specifics/endpoints/history-of-creating-the-finngen-endpoints","siteSpaceId":"sitesp_cLEtR","description":"Concept, definitions and format, register data processing and actual endpoint algorithms","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"-MhYMPp9N-ungMWGTXg7","title":"Location of FinnGen Endpoint and Control Description Files","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"0DRqULsc7fjIq4qzzgug","title":"What's new in DF14 endpoints","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df14-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Location of FinnGen Endpoint and Control Description Files"}]},{"id":"YnYwV56vX9aE9ZPBejfC","title":"What's new in DF13 endpoints","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df13-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Location of FinnGen Endpoint and Control Description Files"}]},{"id":"snKGBRW8QVoH0W0Owfh6","title":"What’s new in DF12 endpoints","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df12-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Location of FinnGen Endpoint and Control Description Files"}]},{"id":"O9a5wLxOspCCcZ53j7aE","title":"What’s new in DF11 endpoints","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df11-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Location of FinnGen Endpoint and Control Description Files"}]},{"id":"ZbeqZ2ts9FPnjorI9Jle","title":"What’s new in the DF10 endpoints","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-the-df10-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Location of FinnGen Endpoint and Control Description Files"}]},{"id":"JHXmHWmUoAiKFE1sMZlZ","title":"What’s new in DF9 endpoints","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df9-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Location of FinnGen Endpoint and Control Description Files"}]},{"id":"FrobHV5PkPfxn1oqcbFT","title":"What’s new in DF8 endpoints","pathname":"/finngen-data-specifics/endpoints/where-the-finngen-endpoint-description-file-is-located/whats-new-in-df8-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Location of FinnGen Endpoint and Control Description Files"}]},{"id":"-MkvW6Zy6XeqHYQwqpmd","title":"Interpretation of Endpoint Definition file","pathname":"/finngen-data-specifics/endpoints/how-to-interpret-endpoint-definition-file","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"-MkvW6Zzk6vPv9nQGABO","title":"Location of Endpoint Quality Control Report","pathname":"/finngen-data-specifics/endpoints/endpoint-quality-control-for-data-freeze-8","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"-MhYMPpAb9dSKNxFZFrt","title":"Creating a User-defined Endpoint(s)","pathname":"/finngen-data-specifics/endpoints/link-to-how-to-make-a-user-defined-endpoint","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"-MhYMPpBKiRKFDTXM0j9","title":"Requesting a User-defined Endpoint to be included in Core Analysis","pathname":"/finngen-data-specifics/endpoints/requesting-a-user-defined-endpoint-to-be-part-of-core-analysis","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"kj6rY9lFo3W6GixwNdFk","title":"Complete follow-up time of the FinnGen registries – primary endpoint data","pathname":"/finngen-data-specifics/endpoints/complete-follow-up-time-of-the-finngen-registries-primary-endpoint-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"}]},{"id":"Oz402LNx8Pq0Si13oBZJ","title":"Survival analysis using the truncated endpoint file – secondary endpoint data","pathname":"/finngen-data-specifics/endpoints/complete-follow-up-time-of-the-finngen-registries-primary-endpoint-data/survival-analysis-using-the-truncated-endpoint-file-secondary-endpoint-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Endpoints"},{"label":"Complete follow-up time of the FinnGen registries – primary endpoint data"}]},{"id":"Wg4VtPvn3SFpHEuokZzY","title":"Biobanks in Finland","pathname":"/finngen-data-specifics/biobanks-in-finland","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"puol7IkJ6zf5io8PZU0G","title":"Specifics of the Blood Service Biobank data","pathname":"/finngen-data-specifics/biobanks-in-finland/specifics-of-the-blood-service-biobank-data","siteSpaceId":"sitesp_cLEtR","description":"Due to specific blood donation eligibility criteria, Blood Service Biobank participants share distinct features.","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Biobanks in Finland"}]},{"id":"gNzp3SxK8w2uMVvcyaYF","title":"Red Library Data (individual level data)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"y6WDFhHFiK7jfdu5jJKa","title":"Genotype data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"}]},{"id":"xgYvTO5UqoONiXY9IWK4","title":"Genotype Arrays Used","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/affymetrix-chip-and-its-design","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"}]},{"id":"hopJNu1uT7bkFnKRctMH","title":"Legacy cohorts and chips","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/affymetrix-chip-and-its-design/legacy-cohorts-and-chips","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Arrays Used"}]},{"id":"ldYLkdnKSIAur0R3o6Xj","title":"Imputation Panel","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"}]},{"id":"B39Qs2O9PCeA61DUflrk","title":"Sisu v4.2 reference panel","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v4.2-reference-panel","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Imputation Panel"}]},{"id":"0u9mqCqFCiq9u1HaZYR8","title":"Variant-wise QC metrics file","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v4.2-reference-panel/variant-wise-qc-metrics-file","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Imputation Panel"},{"label":"Sisu v4.2 reference panel"}]},{"id":"kA7axVGhY51jimWPUkVn","title":"Sisu v4 reference panel","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v4-reference-panel","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Imputation Panel"}]},{"id":"vsO396t0ehs2BWDc10mG","title":"Sisu v3 reference panel","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/imputation-panel/sisu-v3-reference-panel","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Imputation Panel"}]},{"id":"5qt9TMZEs1OW1cxh5vy4","title":"Genome build used in FinnGen","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/human-genome-build-we-use-and-how-do-we-report-genotypes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"}]},{"id":"nITDbVlpwjXr88MI37Ow","title":"Genotype Data Processing Flow","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/description-of-how-the-data-is-processed-in-refinery","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"}]},{"id":"KaIFMLsZ85AkLVbqXEKz","title":"Genotype Files in Sandbox","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"}]},{"id":"Q6y0xDElwQeuu2htV665","title":"Imputed genotypes in VCF format","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/imputation-data-file","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"zNJXl09O8tkklEK1pAVm","title":"Imputed genotypes in BGEN format","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/bgen-file","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"VgcfBijpez6fzgwjkUIP","title":"Imputed genotypes in PLINK format","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/genotype-plink-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"Kqxpc41Fhp60D0xEmJOF","title":"Chip data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/chip-data-file","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"lscWxi00LpVMj6JqaNoI","title":"Imputed HLA alleles","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/imputed-hla-alleles","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"eM9OeiFwjGukMoFGG3Zp","title":"Principal components analysis (PCA) data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/pca-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"FbvCzUlGKk112LkyVDWx","title":"Kinship data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/kinship-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"ndNOH7XDroQjGsgezvxE","title":"Analysis covariates","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/covariate-file","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"Le32Ex424dJuvz3WjO06","title":"Polygenic risk scores (PRS)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/prs-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"zC1lMoveMVPJkpn2JeM9","title":"Genetic Ancestry","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/genetic-ancestry","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"YUBGMKtCQoBqloiO2kZa","title":"Genetic relationships (GRM)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/grm-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"pKxXXjqUEpNHqqsOzywy","title":"Mosaic chromosomal alterations (mCA)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/mca-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"EhXnPSL3aVY7I8HDwMJ8","title":"Prune data (R9)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/prune-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"eE7fZ4vE63AcC24j0M0W","title":"Imputed STR genotypes (R8)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/genotype-data/types-of-genotype-files-available/imputed-str-genotypes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Genotype data"},{"label":"Genotype Files in Sandbox"}]},{"id":"lNg2fIiJNUsz95rijNEu","title":"Phenotype data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"}]},{"id":"jSYATK0ZhO4Yu32UaeWE","title":"Register data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/registers-in-the-detailed-longitudinal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"bQEFeq04FPk6uO5w3wzN","title":"Detailed longitudinal data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/detailed-longitudinal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"IexCZwI8llzEyrYXk23B","title":"Splitting combination codes in detailed longitudinal data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/detailed-longitudinal-data/what-are-combination-codes-and-how-they-are-separated-in-detailed-longitudinal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Detailed longitudinal data"}]},{"id":"9MhcSPoiHtwk4qo5gawD","title":"Service sector data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/service-sector-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"gVzuOKsqJ0uvqt4MOAXK","title":"Service sector data code translations","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/service-sector-data/service-sector-data-code-translations","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Service sector data"}]},{"id":"2fD9GZO5De5tEPkvTUd3","title":"Endpoint and endpoint longitudinal data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/endpoint-and-endpoint-longitudinal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"960WiPPbMcoM8lasQ4H5","title":"Kanta lab values","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"nA9we0x01SaJAnm5s62P","title":"Data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Kanta lab values"}]},{"id":"pU8AwAhtkmM8IUptrs16","title":"V2 info","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/data/v2-info","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Kanta lab values"},{"label":"Data"}]},{"id":"YUOeEUa4yEu7cvdi6BJy","title":"FAQ","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/faq","siteSpaceId":"sitesp_cLEtR","description":"Explanations for common questions about the Kanta lab values dataset","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Kanta lab values"}]},{"id":"EoEgHdNnt1auscZlXMYZ","title":"How-to guides","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-lab-values/how-to-guides","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Kanta lab values"}]},{"id":"fj48k1yWb7bZOpdpTsgl","title":"Kanta prescriptions","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-prescriptions","siteSpaceId":"sitesp_cLEtR","description":"Kanta prescription data file was introduced in Data Release 12. It contains data about prescriptions in Kanta.","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"d7z7vKKOZ67aGLmbNZ3N","title":"Kanta medication delivery","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/kanta-medication-delivery","siteSpaceId":"sitesp_cLEtR","description":"Kanta medication delivery data file was introduced in Data Release 12. It contains data about medications that were delivered in Kanta.","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"8nYn6Zjcdq3v1drAbRGl","title":"Drug Events","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/drug-events","siteSpaceId":"sitesp_cLEtR","description":"Drug events table is a combined table of drug events from Kela Purchase, Kanta Medication delivery and Kanta Prescription registries.","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"CNGd2sZcrdKpRvtywdFW","title":"Minimum extended phenotype data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minumum-extended-phenotype-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"kJYjsUdssZF8qYPpOJhb","title":"Extracting minimum phenotype data per biobank","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minumum-extended-phenotype-data/extraction-of-finngen-minimum-data-set-information-per-biobank","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Minimum extended phenotype data"}]},{"id":"hJmVv3C2E8cdD8QiVzDn","title":"DNA isolation protocols per biobank","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minumum-extended-phenotype-data/dna-isolation-protocols-per-biobank","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Minimum extended phenotype data"}]},{"id":"2iqU1t0nXRt52d8WoEFd","title":"Minimum longitudinal data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minimum-longitudinal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"56HeK0RR2xkNVAMxF0Nr","title":"Endpoint Cohorts","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/endpoint-cohorts","siteSpaceId":"sitesp_cLEtR","description":"Transformation file of FinnGen Endpoint file output from Endpointter","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"xNRCvT4tNCQkw8npg1Pk","title":"Minimum phenotype data (before R11)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/minimum-and-minimum-longitudinal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"-MhYMPp5d669Gf-wPds9","title":"Cohort data (before R11)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/cohort-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"GWC9wLZuaWCWqjlh8jeQ","title":"Other register data files in Sandbox","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"HPF8eOWUF4fzSgWGhlte","title":"Register of Congenital Malformations","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/the-register-of-congenital-malformations","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"T4Dt07Fkrj1DP3gWH5IS","title":"Finnish Registry for Kidney Diseases","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-registry-for-kidney-diseases","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"iN91r6pjWbK9T79E9Ydx","title":"Reproductive history data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/reproductive-history-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"yFZZVwRCmBJ8y9Oq8mkW","title":"Finnish Cancer Registry: Cervical cancer screening","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-cancer-registry-cervical-cancer-screening","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"jxuHan7GZQTcR8R4z7vj","title":"Finnish Cancer Registry: Breast cancer screening","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-cancer-registry-breast-cancer-screening","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"W8RLVnKie9AtlmP0aEAa","title":"Finnish Cancer Registry: Detailed cancer data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-cancer-registry-detailed-cancer-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"h5nazcYtImIA7fOqQgJn","title":"Finnish Register of Visual Impairment","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/the-finnish-register-of-visual-impairment","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"n8kyIMzk0c3KqApupccu","title":"Parental cause of death data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/parental-cause-of-death-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"Xix6m2VueKTD55ZINump","title":"Ejection fraction data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/ejection-fraction-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"2Qq62wbtPLbV7vtlZJEc","title":"Finnish National Infectious Disease Register","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/infectious-disease-registry-covid-19","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"DARwI3qUqNdZ6wYaYTjZ","title":"Finnish National Vaccination Register","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/finnish-national-vaccination-registry","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"l3Bu6YzxBCmnE21v256A","title":"Covid-19 primary care data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/covid-19-primary-care-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"Nuac52Mg8IWZOsrVOdcj","title":"Blood donor data from the Finnish Red Cross Blood Service (FRCBS)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/blood-donor-data-from-the-finnish-red-cross-blood-service-frcbs","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"vCAwIAU5rZa5vls4kPjn","title":"Dental data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/dental-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"PHdkxgY0fPqXPC4wZx23","title":"Socioeconomic data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/socioeconomic-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"13h22vD8tQ8iR6zcWnQr","title":"Hilmo and avohilmo extended data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/other-registers/hilmo-and-avohilmo-extended-data","siteSpaceId":"sitesp_cLEtR","description":"Details on the extended Hilmo and Avohilmo data containing anthropometric measures, smoking an alcohol use, blood pressure measurements and long-term (chronic) conditions.","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Other register data files in Sandbox"}]},{"id":"eC4dTHBUXgv6AtmJbfQS","title":"Task Force disease related data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/task-force-disease-related-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"NeAIqOgOGq1wyerhAnq4","title":"Harmonized Data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"}]},{"id":"aZVDGOiXgY8RaKh91trF","title":"Harmonized biologic medications dataset","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data/harmonized-biologic-medications-dataset","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Harmonized Data"}]},{"id":"3OTTiA4AIuuE1GYYLSpI","title":"Smoking Data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data/smoking-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Harmonized Data"}]},{"id":"rsIHcZiTtidaSRqtGQvN","title":"Height/weight/BMI Data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/what-phenotype-files-are-available-in-sandbox-1/harmonized-data/height-weight-bmi-data","siteSpaceId":"sitesp_cLEtR","description":"Weight, height, and BMI measurements harmonized from FinnGen registers (March 2026).","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Phenotype data"},{"label":"Harmonized Data"}]},{"id":"yumvCEMDWsPTzFhClvCA","title":"Omics data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"}]},{"id":"Bk0niP3GXZUamHm7LOxz","title":"Proteomics","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics","siteSpaceId":"sitesp_cLEtR","description":"A summary of the proteomic data available so far in FinnGen is provided below. For additional information, please check the corresponding subpages (e.g., Expansion area 5 and FinnGen 3).","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"}]},{"id":"V4EzL5aUOcT8A5ZZnkQh","title":"Expansion Area 5 proteomics data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/expansion-area-5-proteomics-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"},{"label":"Proteomics"}]},{"id":"X9W9Tl0x8JXL0cL9W1uJ","title":"FinnGen 3 proteomics data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"},{"label":"Proteomics"}]},{"id":"Kn5S8Y48wxLI07R9hYFv","title":"First batch","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data/first-batch","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"},{"label":"Proteomics"},{"label":"FinnGen 3 proteomics data"}]},{"id":"xbpajN7LDYYCIhsx7UMC","title":"Second batch","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data/second-batch","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"},{"label":"Proteomics"},{"label":"FinnGen 3 proteomics data"}]},{"id":"ycCcZSiexx0098TPwQ0i","title":"Batch 1+2 harmonized data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/proteomics/finngen-3-proteomics-data/batch-1+2-harmonized-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"},{"label":"Proteomics"},{"label":"FinnGen 3 proteomics data"}]},{"id":"35J3BQ3jPTTFxVjJKv40","title":"Metabolomics","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/metabolomics","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"}]},{"id":"4DoZ4QBa5togWr24L5DG","title":"NMR Nightingale Health","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/metabolomics/nmr-nightingale-health","siteSpaceId":"sitesp_cLEtR","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"},{"label":"Metabolomics"}]},{"id":"K4zNPBroG6986kU2MrOo","title":"Metabolon","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/metabolomics/metabolon","siteSpaceId":"sitesp_cLEtR","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"},{"label":"Metabolomics"}]},{"id":"TF0yVnIvRkoksvSVvLSg","title":"Single-cell transcriptomics and immune profiling","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/single-cell-transcriptomics-and-immune-profiling","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"}]},{"id":"T63Gpjw8eNQCJKzo4gVS","title":"High-content cell imaging (Blood Cell Painting)","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/high-content-cell-imaging-blood-cell-painting","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"}]},{"id":"Mw07Q90aQenWfKxEDc2H","title":"Full blood counts and clinical chemistry","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/omics-data/full-blood-counts-and-clinical-chemistry","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"},{"label":"Omics data"}]},{"id":"6sbh5IUzlavaezssxtlr","title":"Hospital administered medications","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/hospital-administered-medications","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"}]},{"id":"2WWaBGA1HHCZ4NeZRSju","title":"Whole exome sequencing (WES) data","pathname":"/finngen-data-specifics/red-library-data-individual-level-data/whole-exome-sequencing-wes-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Red Library Data (individual level data)"}]},{"id":"-MhYMPpLBuRSXZhQ6xHs","title":"Green Library Data (aggregate data)","pathname":"/finngen-data-specifics/green-library-data-aggregate-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"-MhYMPpMeda_wmZv5t8p","title":"What is \"Green\" Data?","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/what-is-green-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"}]},{"id":"-MhYMPpNV63RlLKCPCfb","title":"Accessing Green Data","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/how-can-you-download-green-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"}]},{"id":"-MhYMPpOmmUedA5I9flY","title":"Other analyses available","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"}]},{"id":"-MhYMPpPFMiKU4SDAIIA","title":"Colocalizations in FinnGen","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Other analyses available"}]},{"id":"na5QoeejMtgk5kP9IK1d","title":"Colocalization in FinnGen prior to DF13","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/colocalizations/colocalization-in-finngen-prior-to-df13","siteSpaceId":"sitesp_cLEtR","description":"How colocalization was done before the change to coloc-susie","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Other analyses available"},{"label":"Colocalizations in FinnGen"}]},{"id":"-MhYMPpQq2N6ri2OVTsr","title":"Autoreporting – information on overlaps","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/autoreporting-information-of-overlaps","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Other analyses available"}]},{"id":"-MhYMPpS7M-8aU7JreIV","title":"HLA","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/hla","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Other analyses available"}]},{"id":"vNAisH3Eu409x1x02FPB","title":"LoF burden test","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/lof-burden-test","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Other analyses available"}]},{"id":"-MkvW6_IgfaIOX9rs-54","title":"Meta-analyses","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/other-analyses-available/meta-analyses","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Other analyses available"}]},{"id":"pM9GCfsXuKatysjcKXLJ","title":"Core analysis results files","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"}]},{"id":"cXM19ji130C8K8Hoq4qr","title":"Recessive GWAS results format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/recessive-gwas-results-format","siteSpaceId":"sitesp_cLEtR","description":"R12 recessive results file format","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"uzEcKzYefQqtkUe7V6ej","title":"Variant annotation file format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/variant-annotation-file-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"uYeWGoBI804UlzW8YPbH","title":"Genotype cluster plots format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/genotype-cluster-plots-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"2PqQYlrEL1biZoSIDjwd","title":"GWAS results format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/gwas-results-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"shSoEb1RB5Ngy7Ni7t2S","title":"Finemapping results format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/finemapping-results-format","siteSpaceId":"sitesp_cLEtR","description":"Descriptions of the contents and formats of the finemapping pipeline output files","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"t4txegtuLMeQiFOQYp9U","title":"Colocalization results format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/colocalization-results-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"v3DZG8lRYEP9DKwkSCag","title":"Results format in colocalization before DF13","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/colocalization-results-format/results-format-in-colocalization-before-df13","siteSpaceId":"sitesp_cLEtR","description":"Results format for legacy colocalization pipeline","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"},{"label":"Colocalization results format"}]},{"id":"fXbFIUKefWjq2ZDC8VvR","title":"Autoreporting results format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/autoreporting-results-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"1mE3oki7jvgR75aH3hla","title":"Sex-specific GWAS results format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/sex-specific-gwas-results-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"68ys7CXbqoGswfMDYBdE","title":"UKBB-FinnGen meta-analysis file formats","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/ukbb-finngen-meta-analysis-file-formats","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"2Ggf2OsI8Qyzc9dXewTk","title":"Pairwise endpoint genetic correlation format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/pairwise-endpoint-genetic-correlation-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"RHqwcKmWPrZ6kJ5GUXDb","title":"Heritabilities","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/heritabilities","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"6L9ihoXsNd2c9AujKJxr","title":"Coding variant associations format","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/coding-variant-associations-format","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"EaWuwZRa6nB2LceFInE4","title":"HLA association results","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/hla-association-results","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"snXhdfVvt5S7Sey9W0NX","title":"Proteomics results","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/proteomics-results","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"Lkdbt7TUr1lnK31kfM8G","title":"Coding variant results including CHIP EWAS (Exome-Wide Association Scan)","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/chip-gwas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"h48gm3ELyy3COLkMQ7n0","title":"Kanta lab association results v1","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/kanta-lab-association-results-v1","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"Xp01rLchUpNJHB44LUMo","title":"Conditional analysis results","pathname":"/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/conditional-analysis-results","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Green Library Data (aggregate data)"},{"label":"Core analysis results files"}]},{"id":"LLQnwJs7AvmRPDkBRtgi","title":"Disease Specific Task Forces and Interest groups","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups","siteSpaceId":"sitesp_cLEtR","description":"One of the main focuses in FinnGen 3 is to deepen our understanding of the factors contributing to disease trajectories. This work is carried out by disease specific task forces.","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"3pWrQi1ZLgjHVkbNjLfj","title":"Inflammatory bowel disease (IBD) Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"T3faIIc2QeMHRZLouGG1","title":"Inflammatory bowel disease (IBD) SNOMED codes data","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force/inflammatory-bowel-disease-ibd-snomed-codes-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Inflammatory bowel disease (IBD) Task Force"}]},{"id":"FLRfo0oBkG9jgfuDnl17","title":"Inflammatory bowel disease (IBD) modified montreal data","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force/inflammatory-bowel-disease-ibd-modified-montreal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Inflammatory bowel disease (IBD) Task Force"}]},{"id":"bJNtfqtiCGqkJiUECYkB","title":"Inflammatory bowel disease (IBD) time to operation & refined disease start data","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/inflammatory-bowel-disease-ibd-task-force/inflammatory-bowel-disease-ibd-time-to-operation-and-refined-disease-start-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Inflammatory bowel disease (IBD) Task Force"}]},{"id":"sBktIliKDKLqmVNFNTJU","title":"Kidney Diseases Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/kidney-diseases-task-force","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"kyvLptUdNvL70kCHKHb0","title":"Kidney diseases Task Force Refined phenotypes","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/kidney-diseases-task-force/kidney-diseases-task-force-refined-phenotypes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Kidney Diseases Task Force"}]},{"id":"BeJteTaNGMyKfzwkQ7BY","title":"Eye Diseases (age-related macular degeneration AMD) Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/eye-diseases-age-related-macular-degeneration-amd-task-force","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"YNBa8U9XGsQtbBwkFsfU","title":"OCT image and visual acuity data","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/eye-diseases-age-related-macular-degeneration-amd-task-force/oct-image-and-visual-acuity-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Eye Diseases (age-related macular degeneration AMD) Task Force"}]},{"id":"daaFZoiWEbQJsZ9VYTfu","title":"Rheumatic Diseases Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"SlYRQ9EMYy3dDNA9poqF","title":"Finnish Rheumatology Quality Register","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force/finnish-rheumatology-quality-register","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Rheumatic Diseases Task Force"}]},{"id":"Wcb4hniNTnxyXbBeZfW6","title":"Finnish Rheumatology Quality Register Medications","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force/finnish-rheumatology-quality-register-medications","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Rheumatic Diseases Task Force"}]},{"id":"GKCx9kplbwfK3KaVo4Cx","title":"Rheumatic diseases Task Force Refined phenotypes","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/rheumatic-diseases-task-force/rheumatic-diseases-task-force-refined-phenotypes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Rheumatic Diseases Task Force"}]},{"id":"adhitHHEJ03JQ5IOTSdy","title":"Pulmonary Diseases Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/pulmonary-diseases-task-force","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"AsTEXsVOhmt64bnHZpCM","title":"Pulmonary diseases Task Force Refined phenotypes","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/pulmonary-diseases-task-force/pulmonary-diseases-task-force-refined-phenotypes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Pulmonary Diseases Task Force"}]},{"id":"UycnNX32PhV6j8nzYdF7","title":"Spirometry data (Pulmonary Task Force)","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/pulmonary-diseases-task-force/spirometry-data-pulmonary-task-force","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Pulmonary Diseases Task Force"}]},{"id":"dE8SRA0U3EPFO2CqOcjS","title":"Alzheimer's Disease Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/alzheimers-disease-task-force","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"b5C9BaV1UWB14ESKgKQJ","title":"Pilot quantitative data from brain MRI images (Alzheimer's disease)","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/alzheimers-disease-task-force/pilot-quantitative-data-from-brain-mri-images-alzheimers-disease","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Alzheimer's Disease Task Force"}]},{"id":"FHekD3Oah2bV9OUEdp0z","title":"Metabolic diseases Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/metabolic-diseases-task-force","siteSpaceId":"sitesp_cLEtR","description":"Chairs: Teemu Niiranen (University of Turku), Michael Holmes (Genentech)","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"FqCnvWoTBdgwE9w1Ly5n","title":"Parkinson's disease Task Force","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/parkinsons-disease-task-force","siteSpaceId":"sitesp_cLEtR","description":"Chairs: Britney Milkovich (Abbvie), Mary Pat Reeve (FinnGen)","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"zMbvNZvjfnZlSGxndVcj","title":"Parkinson's disease Task Force Refined phenotypes","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/parkinsons-disease-task-force/parkinsons-disease-task-force-refined-phenotypes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"},{"label":"Parkinson's disease Task Force"}]},{"id":"OlGzHq9bBsuOQYllCeq2","title":"Atopic Dermatitis Interest group","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/atopic-dermatitis-interest-group","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"1C2phGmvQBFaxcy4mcxe","title":"Heart Failure Interest group","pathname":"/finngen-data-specifics/disease-specific-task-forces-and-interest-groups/heart-failure-interest-group","siteSpaceId":"sitesp_cLEtR","description":"Chair: Jonathan Chung (Novartis), Emily Holzinger (BMS)","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Disease Specific Task Forces and Interest groups"}]},{"id":"xXQFWy23AqcXAzc6m5xg","title":"Expansion Area 3 (EA3) studies","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"}]},{"id":"UiyVESxRjLCk4jaBZBs8","title":"EA3 study: Fatty liver disease study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-fatty-liver-disease-project-and-data-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"FYHyg6GklgKYVqx9eKCU","title":"EA3 study: Age-related macular degeneration study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-age-related-macular-degeneration-project-and-data-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"k0T8VNhx7E1d2KYJCiI9","title":"EA3 study: Women's health studies","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"5pAiq0sRu7KcwZl9qPU5","title":"EA3 study: Women’s health – Endometriosis and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies/ea3-study-womens-health-endometriosis-study-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"},{"label":"EA3 study: Women's health studies"}]},{"id":"XrXU0JbJh6gATopKmrRf","title":"EA3 study: Human papilloma virus-related gynecological lesions, and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies/ea3-womens-health-human-papilloma-virus-related-gynecological-lesions-study-and-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"},{"label":"EA3 study: Women's health studies"}]},{"id":"yfL7SW1hDDgf2WObtNTC","title":"EA3 study: Women’s health – PCOS and infertility study, and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-womens-health-studies/ea3-study-womens-health-female-infertility-and-pcos-study-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"},{"label":"EA3 study: Women's health studies"}]},{"id":"9tJEgl28Ee1FyWzRYPKf","title":"EA3 study: Diabetic Kidney Disease and Rare Kidney Disease study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-diabetes-rkd-study-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"IEouoQFOax7jznMbhYgg","title":"EA3 study: Oncology studies","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"975mDHCkF57i8ubPeHCT","title":"EA3 study: Oncology – Breast cancer study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies/ea3-study-breast-cancer-study-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"},{"label":"EA3 study: Oncology studies"}]},{"id":"mWdMpegJAsmayfMzhzej","title":"EA3 study: Oncology –Prostate cancer study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies/ea3-study-prostate-cancer-study-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"},{"label":"EA3 study: Oncology studies"}]},{"id":"kjAUFBlPutf4cTvRXMrt","title":"EA3 study: Oncology – Ovarian cancer study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-oncology-studies/ea3-study-ovarian-cancer-study-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"},{"label":"EA3 study: Oncology studies"}]},{"id":"MplSyqJS8tmg7LQtvQ6W","title":"EA3 study: Pulmonary diseases (IPF, asthma and COPD) study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-pulmonology-study-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"iFuDWDX8z4jD230qT6QY","title":"EA3 study: Immune-mediated diseases","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-immune-mediated-diseases","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"zw5WJB2RS7D6Xojz2SNI","title":"EA3 study: Heart Failure study and data in Sandbox","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/ea3-study-heart-failure-variables","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"om9E8hJJiZptHtr9Uf9U","title":"FinnGen EA3 leads","pathname":"/finngen-data-specifics/expansion-area-3-ea3-projects/finngen-ea3-leads","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FinnGen Data Specifics"},{"label":"Expansion Area 3 (EA3) studies"}]},{"id":"-MhYMPpT7Xb-NPWFl0_B","title":"Working in the Sandbox","pathname":"/working-in-the-sandbox","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"-MhYMPpUzgxmh5ITKvBR","title":"How to get started with Sandbox","pathname":"/working-in-the-sandbox/how-to-get-started-with-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"-MhYMPpVrAEigJs7dEvk","title":"What is Sandbox and what can you do there","pathname":"/working-in-the-sandbox/uniqueness-of-sandbox-in-providing-a-secure-environment-to-access-individual-level-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"-MhYMPpXelqNTCQHA1R8","title":"What do we mean by \"red\" and \"green\" data?","pathname":"/working-in-the-sandbox/what-do-we-mean-by-red-and-green-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"e6kzg15Ymll2gsA7pnS8","title":"General workflows for the most common analyses","pathname":"/working-in-the-sandbox/general-workflows-for-the-most-common-analyses","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"-MhYMPpZChohWlWu7V4N","title":"Quirks and Features","pathname":"/working-in-the-sandbox/quirks-and-features","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"xhg2hWW1mOTroyZZDwTl","title":"Managing your files in Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/managing-your-files-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPp_4O8EQV5RwNOr","title":"Navigating the Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/navigating-the-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"oh6mzifAiNCW8vjASi3N","title":"How to save Sandbox window configuration","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-save-sandbox-window-configuration","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpaTAc9mW6TumMn","title":"Copying and pasting in and out of your IVM","pathname":"/working-in-the-sandbox/quirks-and-features/copying-and-pasting-in-and-out-of-your-ivm","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpbSUTFgwVg-3rN","title":"How to report issues from within the Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-report-bugs","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpdfrRXHCfjxev2","title":"Sharing individual-level data within the Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/sharing-individual-level-data-within-the-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpew3SLAnWmsq8j","title":"How to download results from your IVM","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-download-results-from-your-ivm","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"ZamU8s4zZgdD7stAhpAm","title":"Sandbox download requests – rules and examples for minimum N","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-download-results-from-your-ivm/sandbox-download-requests-rules-and-examples-for-minimum-n","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"},{"label":"How to download results from your IVM"}]},{"id":"-MhYMPpfNGdSab9Wy-5n","title":"Keyboard combinations","pathname":"/working-in-the-sandbox/quirks-and-features/keyboard-combinations","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpgKZBhXFdTj4Q2","title":"Running analyses in your IVM vs. Pipelines","pathname":"/working-in-the-sandbox/quirks-and-features/difference-between-running-things-in-your-ivm-vs.-pipelines","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPphYy5q5FzG1d1_","title":"Timeouts and saving your work (backups, github)","pathname":"/working-in-the-sandbox/quirks-and-features/timeouts-and-saving-your-work-backups-github","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"kMdeygtwis5n1C7NnE2y","title":"Install R and Python packages from the local Sandbox repository","pathname":"/working-in-the-sandbox/quirks-and-features/r-and-python-local-repositories-in-finngen-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"zDxzyi1ZZwEBlCfyrMm1","title":"How to install GNU Debian package","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-install-gnu-debian-package","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpi1lsY6cdx40gi","title":"How to upload your own files to IVM via /finngen/green","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-upload-to-your-own-ivm-via-finngen-green","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"88Z0cCkiQmwnX7hXUBPl","title":"How to remove files from /finngen/green","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-remove-files-from-finngen-green","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"XoI24BWP1xbnL22oSrpK","title":"Using Sandbox as a Chrome application (full screen mode)","pathname":"/working-in-the-sandbox/quirks-and-features/using-sandbox-as-a-chrome-application-full-screen-mode","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"Lno3Fjpq5d8KAIIM89BF","title":"How to reset your finngen.fi account password","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-reset-your-finngen.fi-account-password","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"q01oXLvGGS3s5qeRqLED","title":"Sandbox IVM tool request handling policy","pathname":"/working-in-the-sandbox/quirks-and-features/sandbox-ivm-tool-request-handling-policy","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-Miuu17m5SkEORlqlnuj","title":"Docker images","pathname":"/working-in-the-sandbox/quirks-and-features/docker-images","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-Miuu17nFE6AgmgF6ClB","title":"How to get a new Docker image to Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/docker-images/how-to-get-a-new-docker-image-to-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"},{"label":"Docker images"}]},{"id":"-Miuu17o3r0frbWpYPTb","title":"How to mount data into Docker container image","pathname":"/working-in-the-sandbox/quirks-and-features/docker-images/how-to-mount-data-into-docker-container-image","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"},{"label":"Docker images"}]},{"id":"-Miuu17pJI_SSUqN1HF6","title":"Containers available to Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/docker-images/containers-available-to-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"},{"label":"Docker images"}]},{"id":"-Miuu17qgGgmIdt8OGkd","title":"Containers with user customized tool sets","pathname":"/working-in-the-sandbox/quirks-and-features/docker-images/packages-conflicting-other-packages-in-current-ivm","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"},{"label":"Docker images"}]},{"id":"JGO1pPhbvgompxN5hisp","title":"How to write a Docker file","pathname":"/working-in-the-sandbox/quirks-and-features/docker-images/how-to-write-a-docker-file","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"},{"label":"Docker images"}]},{"id":"GGasts0ZvTmq5O3uSriJ","title":"Anaconda Python environment in the Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/docker-images/anaconda-python-environment-in-the-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"},{"label":"Docker images"}]},{"id":"-MkvW6_hDUWi1bzUemnm","title":"Python Virtual Environment in Sandbox","pathname":"/working-in-the-sandbox/quirks-and-features/python-virtual-environment-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpcv5c0LkKgmBau","title":"How to shut down your IVM","pathname":"/working-in-the-sandbox/quirks-and-features/how-to-shut-down-your-ivm","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Quirks and Features"}]},{"id":"-MhYMPpkq_TUvs3qUvu6","title":"Which tools are available?","pathname":"/working-in-the-sandbox/which-tools-are-available","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"SHkw2yZYjQjXWIyRQIrB","title":"FinnGen exome query tool","pathname":"/working-in-the-sandbox/which-tools-are-available/finngen-exome-query-tool","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"-MhYMPplWKV2Cmn_OXvw","title":"Custom GWAS tools","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"-MhYMPpnRO-pzELvvXBo","title":"Custom GWAS command line (CLI) tool","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled/custom-gwas-command-line-cli-tool","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Custom GWAS tools"}]},{"id":"llcBBxePvDZtN5ZoaI4C","title":"Custom GWAS CLI Binary mode","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled/custom-gwas-command-line-cli-tool/custom-gwas-cli-binary-mode","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Custom GWAS tools"},{"label":"Custom GWAS command line (CLI) tool"}]},{"id":"uwitL403FmVqxt7hxqn7","title":"Custom GWAS CLI Quantitative mode","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled/custom-gwas-command-line-cli-tool/custom-gwas-cli-quantitative-mode","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Custom GWAS tools"},{"label":"Custom GWAS command line (CLI) tool"}]},{"id":"-MkvW6_mi3Xdk-P1gpiU","title":"How to make your summary stats viewable in a PheWeb-style?","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled/how-to-set-up-a-pheweb-browser-for-summary-statistics","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Custom GWAS tools"}]},{"id":"SFJx2YR8qoNVWzHSIbM8","title":"Finemapping of Custom GWAS analyses","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled/finemapping-of-custom-gwas-analyses","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Custom GWAS tools"}]},{"id":"nU8dEfYma22Rz1NGjqpy","title":"PheWeb Users Input Validator tool","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled/pheweb-users-input-validator-tool","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Custom GWAS tools"}]},{"id":"g1g4aPYZlF2GIbHEiJPe","title":"Conditional analysis of Custom GWAS analyses","pathname":"/working-in-the-sandbox/which-tools-are-available/untitled/conditional-analysis-of-custom-gwas-analyses","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Custom GWAS tools"}]},{"id":"-MhYMPpoebI2O6qewHX2","title":"Pipelines tool","pathname":"/working-in-the-sandbox/which-tools-are-available/pipelines","siteSpaceId":"sitesp_cLEtR","description":"Information about the Sandbox Pipelines tool","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"-Miuu17wWXdRlMkah2vB","title":"Pre-installed Linux tools","pathname":"/working-in-the-sandbox/which-tools-are-available/unix-tools","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"yFV64RowgF2kAJg5vAyZ","title":"PGS Browser","pathname":"/working-in-the-sandbox/which-tools-are-available/pgs-browser","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"tDLcFb3AwSekvAO7r5Yi","title":"Lmod Linux tools","pathname":"/working-in-the-sandbox/which-tools-are-available/lmod-linux-tools","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"FqF02Xk6ECiAGx9H4Q0z","title":"Anaconda Python module with ready set of scientific packages","pathname":"/working-in-the-sandbox/which-tools-are-available/anaconda-python-module-with-ready-set-of-scientific-packages","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"c5Gm962oyYqXGGwzAc6S","title":"Python packages","pathname":"/working-in-the-sandbox/which-tools-are-available/python-packages","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"-Miuu17xF0zteZrkiGPN","title":"R packages","pathname":"/working-in-the-sandbox/which-tools-are-available/r-libraries","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"1pOSy0ISLJhNrtUriuhC","title":"Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"NXeJDZSFd123vjH0c1qM","title":"Quick guide","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"}]},{"id":"IkMQaxfcBKwPLJzgPycs","title":"Introduction to OHDSI, OMOP CDM and Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/introduction-to-ohdsi-omop-cdm-and-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Quick guide"}]},{"id":"frVRih8qHJFvWU4x10hp","title":"From research question to concepts and cohort building","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/from-research-question-to-concepts-and-cohort-building","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Quick guide"}]},{"id":"XMB1D3EngJtaTQOZf8cu","title":"Using Atlas in Sandbox","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/using-atlas-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Quick guide"}]},{"id":"obK2YvV9wXvVrnv9EeQC","title":"Examples on cohort building with Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/quick-guide/examples-on-cohort-building-with-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Quick guide"}]},{"id":"FDM4oT3R1NLItkM4NfZ1","title":"Detailed guide","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"}]},{"id":"TquiWzF74VJLkbwXp3la","title":"Atlas data model","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/atlas-data-model","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"}]},{"id":"Wcb0T7xSHzkjpMrkH7tw","title":"Standard and non-standard codes","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/code-sets-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"}]},{"id":"MbC9lbf3zKw6TnZdTHXI","title":"How to define a cohort in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"}]},{"id":"mDypQXPbVoJSTwhTZJt3","title":"Select FinnGen data release in Atlas for Search","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/selecting-configuration-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"}]},{"id":"LU3G6tEnHX4yooab0wU0","title":"How to define a simple ICD case-control cohort in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"}]},{"id":"BLPdK4xPi166rka3jBbZ","title":"Define a simple ICD Concept Set in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas/define-a-simple-icd-concept-set-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"How to define a simple ICD case-control cohort in Atlas"}]},{"id":"iMTghP0aJ46ps0OzKpdf","title":"Define a simple ICD case cohort in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas/define-a-simple-icd-case-cohort-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"How to define a simple ICD case-control cohort in Atlas"}]},{"id":"VhPkEtB4Ey1gQlh8uG0j","title":"Define a simple ICD control cohort in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-to-define-a-simple-icd-case-control-cohort-in-atlas/define-a-simple-icd-control-cohort-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"How to define a simple ICD case-control cohort in Atlas"}]},{"id":"SwfXiRYLngxAJIQtZaoe","title":"Concept Sets","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"}]},{"id":"ajISumPnb7mFTynH1piM","title":"Create Concept Sets using descendants","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/selecting-descendants-for-a-concept-set-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Concept Sets"}]},{"id":"Do6HjK6nwLJ0N5btpVc5","title":"Exclude and Remove codes from Concept Set","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/exclude-and-remove-codes-from-concept-set","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Concept Sets"}]},{"id":"vOUBcnjEjRDgcH4eKaC9","title":"Simplify Concept Sets that use standard code descendants","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/simplify-concept-sets-that-use-standard-code-descendants","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Concept Sets"}]},{"id":"Xl3ojeFoMUBrD33zSFpx","title":"Create Concept Sets using equivalent standard and non-standard codes","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/find-mapped-equivalents-for-standard-and-non-standard-codes-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Concept Sets"}]},{"id":"cOf68wh6QMyI8gHSnyJi","title":"View standard code hierarchy in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/concept-sets/viewing-the-hierarchy-of-standard-snomed-codes-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Concept Sets"}]},{"id":"DY6ynyjOD0vhP0Wpf7Ci","title":"Cohort Definitions","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"}]},{"id":"00rLwQXPbbUmrlPMuJSG","title":"Using the Death register in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/using-the-death-register-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Cohort Definitions"}]},{"id":"EeYWihxmWTslXemhygx3","title":"Filtering by clinical registries in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/filter-by-clinical-registries-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Cohort Definitions"}]},{"id":"lgWDQLZRg9SVHIxocV8G","title":"Filtering by demographic criteria in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/filtering-by-demographic-criteria-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Cohort Definitions"}]},{"id":"5mLL11pNqcCGTwffnTvl","title":"Defining exit rules for a cohort in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/defining-exit-rules-for-a-cohort-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Cohort Definitions"}]},{"id":"HnGiHm3UuCKWS3cqfXY3","title":"Selecting the correct box in Atlas for events and medical codes","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/cohort-definitions/mapping-between-atlas-registries-and-medical-codes","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"},{"label":"Cohort Definitions"}]},{"id":"rBKbRaEWgDCEHZGlEGcp","title":"How to export FinnGen IDs from Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/how-to-define-a-cohort-in-atlas/how-do-you-export-finngen-ids-for-an-analysis-cohort","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"How to define a cohort in Atlas"}]},{"id":"iRaVxINGx9HDZ6sIULak","title":"Downstream analyses after the Atlas cohorts are created","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/downstream-analyses-after-the-atlas-cohorts-are-created","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"}]},{"id":"Zy8FJkzYfCdpp0HIe9tt","title":"Data Release Summary Statistics in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/atlas-data-sources","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"}]},{"id":"8ee3BeJPz7ZpmFjlvtAO","title":"Cohort Summary Statistics in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-characterizations-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"}]},{"id":"s856wuVP7DtF3C8Anph6","title":"Time-dependent Cohort Summary Statistics in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-characterizations-in-atlas/interpreting-the-results-of-feature-analysis-in-atlas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"Cohort Summary Statistics in Atlas"}]},{"id":"2M1d1u0vZHPgdvAczz6K","title":"Event inclusion in Cohort Summary Statistics in Atlas","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-characterizations-in-atlas/improving-cohorts-using-cohort-characterizations-tool","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"},{"label":"Cohort Summary Statistics in Atlas"}]},{"id":"WL1Ktvmyj0P7QGPaeDwL","title":"Cohort Pathways","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas/detailed-guide/cohort-pathways","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Atlas"},{"label":"Detailed guide"}]},{"id":"-MhYMPpp_NWtI9l0h5zF","title":"BigQuery (relational database)","pathname":"/working-in-the-sandbox/which-tools-are-available/bigquery-relational-database","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"ibJX9rK0flZVmDMW2pq7","title":"Atlas vs BigQuery cohorts","pathname":"/working-in-the-sandbox/which-tools-are-available/atlas-vs-bigquery-cohorts","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"-MhYMPpqX6n8m06KcS9G","title":"Genotype Browser","pathname":"/working-in-the-sandbox/which-tools-are-available/genotype-browser","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"Wkr1U62a5brS24UZHkSP","title":"Jupyter","pathname":"/working-in-the-sandbox/which-tools-are-available/jupyter","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"VJYHlLSbUjeMYUVGY6PW","title":"Cohort Operations tool (CO)","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"RXnjW2UzSyhYPEKx1mOZ","title":"Upload cohorts to CO","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/upload-cohorts-to-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"7nIAmFuxkIgqyofDIRTL","title":"Combine cohorts with CO","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/combine-cohorts-with-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"RfmRNW5ibeaJGBgwxvIr","title":"Operate on Atlas cohorts and data with entries and exit events","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/modifying-atlas-cohort-with-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"hYH4kpeTG3rLhaZIOxTm","title":"Explore code and endpoint enrichments with CO (CodeWAS)","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/explore-code-and-endpoint-enrichments-with-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"BwEtRUlQFEKQ5Ryac9na","title":"Explore endpoint overlaps with CO","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/explore-endpoint-overlaps-with-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"TsK802XQWL5f3xf5fbOL","title":"Compare custom endpoint to FinnGen endpoint with CO","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/compare-custom-endpoint-to-finngen-endpoint-with-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"wvWWEWZWrkmEFP0IS1sO","title":"Launch custom GWAS with CO","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/launch-custom-gwas-with-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"pJ0MJM0ZVcyIRuFXpBEx","title":"Export FinnGen IDs using CO","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/export-finngen-ids-using-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"2Lz38Wb6uUIHj6KRBklO","title":"Understanding phenotypic overlaps using CO","pathname":"/working-in-the-sandbox/which-tools-are-available/cohort-operations-tool-co/understanding-phenotypic-overlaps-using-co","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Cohort Operations tool (CO)"}]},{"id":"ydx6uVazyk8ZipXAaeE0","title":"Trajectory Visualization Tool (TVT)","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"wIosh0slrZgKBZWy2Xbk","title":"Running TVT","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"}]},{"id":"zrsQK1FbiX5G80lHG2VM","title":"Filtering timelines with TVT","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/filtering-timelines-with-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"},{"label":"Running TVT"}]},{"id":"zdiSmIlP6O7wWlF6BDr9","title":"Reordering timelines with TVT","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/reordering-timelines-with-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"},{"label":"Running TVT"}]},{"id":"bXrEejTH0a4tRopV9CBU","title":"Clustering timelines with TVT","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/clustering-timelines-with-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"},{"label":"Running TVT"}]},{"id":"3qd7CMX8DfY57ohorPAD","title":"Viewing TVT results","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/trajectory-visualization-tool-tvt/viewing-tvt-results","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"},{"label":"Running TVT"}]},{"id":"wLVZRotLjESqQyrgkixK","title":"Viewing Atlas, CO, and Genotype cohorts in TVT","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/viewing-atlas-co-and-genotype-cohorts-in-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"}]},{"id":"52kudO4mdF3UUSReKox8","title":"Exporting cohorts from TVT","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/exporting-cohorts-from-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"}]},{"id":"DSg4NPXZEttfIKSxCv35","title":"TVT help page","pathname":"/working-in-the-sandbox/which-tools-are-available/trajectory-visualization-tool-tvt/tvt-help-page","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Trajectory Visualization Tool (TVT)"}]},{"id":"MlNIN4Dc16VLYpVdGhkS","title":"LifeTrack","pathname":"/working-in-the-sandbox/which-tools-are-available/lifetrack","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"MtHLcxygNw5xwPDnuH5T","title":"Miscellaneous helper scripts/tools","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"bx0yLNIrc7BktKPC05pM","title":"Tool to annotate variants with RSIDs","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"}]},{"id":"14LkBFYYq4KMgLBWGOat","title":"Proper translations of medical, service sector and provider codes","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/r-functions-to-translate-medical-codes","siteSpaceId":"sitesp_cLEtR","description":"Utilizing R fuctions from FinnGenUtilsR","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"}]},{"id":"oez9x27DDkRF2NhA1E02","title":"BigQuery Connection – R","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"}]},{"id":"iKAtRHjT8vTyyCou3gDZ","title":"Case study – All register data for a person","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-all-register-data-for-a-person","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection – R"}]},{"id":"yGRs737ZIXNlFEu2YvUl","title":"Case study – UpSet plot","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-upset-plot","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection – R"}]},{"id":"U7Mlj7wSlS47Umosz4Hf","title":"Case study – Tornado plot","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-tornado-plot","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection – R"}]},{"id":"DxRoOr1aZKHR4yy5R7AN","title":"Case study – defining simple cohorts using medical codes for running case-control GWAS","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/bigquery-connection-r/case-study-defining-simple-cohorts-using-medical-codes-for-running-case-control-gwas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection – R"}]},{"id":"oGRJ0slVy9RJ5LXqGGoG","title":"BigQuery Connection - Python","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"}]},{"id":"p29ZhyRcTT6QK32H3dq5","title":"BigQuery Python - Downstream analysis - Active Ingredient - Bar plot","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-downstream-analysis-active-ingredient-bar-plot","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection - Python"}]},{"id":"H4gutqWToBVJzL1B09rY","title":"BigQuery Python - Case Study - Sex different - Tornado plot","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-case-study-sex-different-tornado-plot","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection - Python"}]},{"id":"4TRbgrhHnotP3tfTmRWW","title":"BigQuery Python - Case Study - Comorbidity - Upset plot","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-case-study-comorbidity-upset-plot","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection - Python"}]},{"id":"98FjRsteo8Ec8vQP2NWW","title":"BigQuery Python - Case Study - Patient Timeline - Scatter plot","pathname":"/working-in-the-sandbox/which-tools-are-available/miscellaneous-helper-scripts-tools/tool-to-annotate-variants-with-rsids-1/bigquery-python-case-study-patient-timeline-scatter-plot","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"},{"label":"Miscellaneous helper scripts/tools"},{"label":"BigQuery Connection - Python"}]},{"id":"vsInOU1mFQ6nVSQwvPEJ","title":"Sandbox internal API for software developers","pathname":"/working-in-the-sandbox/which-tools-are-available/sandbox-internal-api-for-software-developers","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Which tools are available?"}]},{"id":"-MhYMPpwysAYgRWAZ5dP","title":"Working with Phenotype Data","pathname":"/working-in-the-sandbox/working-with-phenotype-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"-MkvW6a2iCtB6vIlqsfZ","title":"Variant PheWas","pathname":"/working-in-the-sandbox/working-with-phenotype-data/variant-phewas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Phenotype Data"}]},{"id":"aY8DgEzXhSBVxIRCDOph","title":"How to select controls for your cases","pathname":"/working-in-the-sandbox/working-with-phenotype-data/how-to-select-controls-for-your-cases","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Phenotype Data"}]},{"id":"-Miuu1891NAgPHNMtH8Y","title":"Using the R libraries to look at Phenotype data","pathname":"/working-in-the-sandbox/working-with-phenotype-data/using-the-r-libraries-to-look-at-phenotype-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Phenotype Data"}]},{"id":"qnLapnGq18UB5EyKHrbt","title":"How to check case counts from the data","pathname":"/working-in-the-sandbox/working-with-phenotype-data/how-to-check-case-counts-from-the-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Phenotype Data"}]},{"id":"-MhYMPpyxtrPfamYCot-","title":"Creating your own user-defined endpoint","pathname":"/working-in-the-sandbox/working-with-phenotype-data/creating-your-own-user-defined-endpoint","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Phenotype Data"}]},{"id":"-MhYMPpuKOdi1Km4rWHu","title":"Working with Genotype Data","pathname":"/working-in-the-sandbox/working-with-genotype-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"-MkvW6_xLSRCCWs-fnRQ","title":"Genotype Browser how to","pathname":"/working-in-the-sandbox/working-with-genotype-data/genotype-browser","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"-MkvW6_yj-r4anfTVGaa","title":"Cluster Plots","pathname":"/working-in-the-sandbox/working-with-genotype-data/cluster-plots","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"n7SASTAwAQQn7NKDSdSL","title":"ClusterPlot viewer V3C","pathname":"/working-in-the-sandbox/working-with-genotype-data/install-clusterplot-viewer-v3c","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"D2BoM8ib12D7nOTlrm9r","title":"Rare Variant Calling in V3C","pathname":"/working-in-the-sandbox/working-with-genotype-data/rare-variant-calling-in-v3c","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"-MkvW6_zMRvvpQ69iW34","title":"Create map of allele","pathname":"/working-in-the-sandbox/working-with-genotype-data/untitled","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"-MkvW6a-HP7FCVUfTuS9","title":"Genotypes from VCF files","pathname":"/working-in-the-sandbox/working-with-genotype-data/genotypes-from-vcf-files","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"-MkvW6a00rDc9AdHW8Gx","title":"Variant PheWas","pathname":"/working-in-the-sandbox/working-with-genotype-data/variant-phewas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"5QH8jyZyZCCQNP94TWvo","title":"Interpreting rare-variant analysis results","pathname":"/working-in-the-sandbox/working-with-genotype-data/interpreting-rare-variant-analysis-results","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"2cvOE5g7I30oSGDp8GyU","title":"Tools for geno-pheno explorations","pathname":"/working-in-the-sandbox/working-with-genotype-data/tools-for-geno-pheno-explorations","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"}]},{"id":"r8x9kRhZefoVMon79YB7","title":"Example: transferring data from Genotype Browser to LifeTrack","pathname":"/working-in-the-sandbox/working-with-genotype-data/tools-for-geno-pheno-explorations/example-transferring-data-from-genotype-browser-to-lifetrack","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"},{"label":"Tools for geno-pheno explorations"}]},{"id":"IpBPqQyIxdNMBVX41xrb","title":"Example: Visualizing Genotype Browser output data with TVT","pathname":"/working-in-the-sandbox/working-with-genotype-data/tools-for-geno-pheno-explorations/example-visualizing-genotype-browser-output-data-with-tvt","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Working with Genotype Data"},{"label":"Tools for geno-pheno explorations"}]},{"id":"-MhYMPpzhPTz-yga1EQR","title":"Running analyses in Sandbox","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"NeatJHvgwUaca1vhJi2a","title":"Pipelines tool instructions","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions","siteSpaceId":"sitesp_cLEtR","description":"This page contains instructions for the general use of pipelines","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"-MhYMPq-OFrgmSWfm4VJ","title":"How to use the Pipelines tool","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-use-the-pipelines-area","siteSpaceId":"sitesp_cLEtR","description":"This page describes how to use the sandbox Pipelines tool to submit analyses to the cloud and see their status","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"Pipelines tool instructions"}]},{"id":"-MhYMPq0oRaKLT-5Moiv","title":"How to submit a pipeline from the command line (finngen-cli)","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-submit-a-pipeline-from-a-command-line","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"Pipelines tool instructions"}]},{"id":"BUtpcVemUyFbpLbPelh6","title":"Sandbox paths and pipeline mappings","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/sandbox-path-and-pipeline-mappings","siteSpaceId":"sitesp_cLEtR","description":"A list of folders accessible in sandbox and their full bucket paths and mappings","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"Pipelines tool instructions"}]},{"id":"-Miuu18Em92NYpgDEeph","title":"Pipelines is based on Cromwell and WDL","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/pipelines-is-based-on-cromwell-and-wdl","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"Pipelines tool instructions"}]},{"id":"FRfg2XDQUVKoZvY2TgBW","title":"Tips on how to find a pipeline job ID","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/tips-on-how-to-find-a-pipeline-job-id","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"Pipelines tool instructions"}]},{"id":"9LB69St2ykXpxEE7tItf","title":"If your pipeline job fails","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/if-your-pipeline-job-fails","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"Pipelines tool instructions"}]},{"id":"4wHmPf6yIqmyHbzCQK7v","title":"Using Google Life Sciences API in Sandbox","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/using-google-life-sciences-api-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"Pipelines tool instructions"}]},{"id":"G9QFayTYt2PvUwWqthah","title":"How to run survival analyses","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-survival-analyses","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"voqZowPkLb02vo3Ch4CW","title":"How to create custom endpoint using bigquery: example","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-create-custom-endpoint-using-bigquery-example","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"X0p6UVSIOpuLy5t5AUr9","title":"How to run genome-wide association studies (GWAS)","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"Hl67VCjCFYztYoy1twHV","title":"How to run GWAS using REGENIE","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-regenie","siteSpaceId":"sitesp_cLEtR","description":"Instructions for running GWAS in FinnGen sandbox","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"zdF6MA2tmaqUKmQ79x8X","title":"Running quantitative GWAS with REGENIE","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/running-quantitative-gwas-with-regenie","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"KTcunv5BPonbDgO9QMOD","title":"How to run Conditional Analysis","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"PF8hPutVKUM7nDHj1gY0","title":"Unmodifiable Conditional Analysis pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis/unmodifiable-conditional-analysis-pipeline","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"},{"label":"How to run Conditional Analysis"}]},{"id":"cugOg9PUJ6lPiGE7RMxR","title":"Unmodifiable Conditional Analysis Custom Regions Pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis/unmodifiable-conditional-analysis-custom-regions-pipeline","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"},{"label":"How to run Conditional Analysis"}]},{"id":"vUYsyWUMB8QghvhRAALR","title":"Modifiable Conditional Analysis Custom Regions Pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/conditional-analysis/modifiable-conditional-analysis-custom-regions-pipeline","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"},{"label":"How to run Conditional Analysis"}]},{"id":"7VmQJdxpXK1aaqreWcnj","title":"How to run GWAS using SAIGE","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-saige","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"zc4gH2cMommJO0Shxfyn","title":"Adding new covariates in GWAS using REGENIE and SAIGE","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/adding-new-covariates-in-gwas-using-regenie-and-saige","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"YTtQcVjIvTXGvSBosy9Z","title":"How to run GWAS using plink2 (for unrelated individuals only)","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-plink2-for-unrelated-individuals-only","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"y1neTH0LoYI5GRukx9VP","title":"How to run GWAS using REGENIE survival models","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-regenie-survival-models","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"To6oAbKx90pv2h8CGHE6","title":"How to run GWAS using GATE (survival models)","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-gate-survival-models","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"o2ir7uRvxpuYiyO6M28c","title":"How to run trajGWAS","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-trajgwas","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"QLIhEHKZcFPi71skCQtZ","title":"How to run GWAS using the REGENIE unmodifiable pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-the-regenie-unmodifiable-pipeline","siteSpaceId":"sitesp_cLEtR","description":"This page describes how to run a REGENIE GWAS analysis using the FinnGen unmodifiable pipeline","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"IVoDN4hNv3zGIAK5EzdS","title":"How to run an interaction GWAS using the REGENIE unmodifiable pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-an-interaction-gwas-using-the-regenie-unmodifiable-pipeline","siteSpaceId":"sitesp_cLEtR","description":"This page describes how to run an interaction GWAS analysis using the FinnGen unmodifiable interaction REGENIE pipeline","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"Db5jy3S94dowxL5S3g24","title":"How to run survival analysis using GATE unmodifiable pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-survival-analysis-using-gate-unmodifiable-pipeline","siteSpaceId":"sitesp_cLEtR","description":"How to run survival analysis using GATE unmodifiable pipeline","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"6PlYkfwVpwBFyJsyRoKw","title":"How to run GWAS on imputed HLA alleles using Regenie","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-on-imputed-hla-alleles-using-regenie","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run genome-wide association studies (GWAS)"}]},{"id":"A7ERuYga6Ji6MgyknwCy","title":"How to run finemapping pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-finemapping-pipeline","siteSpaceId":"sitesp_cLEtR","description":"Pipelines for finemapping of GWAS results using FINEMAP and SuSiE.","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"wlNeT2tujx9sE2ppO7tX","title":"Unmodifiable Finemapping pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-finemapping-pipeline/unmodifiable-finemapping-pipeline","siteSpaceId":"sitesp_cLEtR","description":"How to run finemapping with SuSiE and FINEMAP with the unmodifiable pipeline","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run finemapping pipeline"}]},{"id":"bC9DgJgVZ2zwDvZIze6g","title":"Modifiable Finemapping pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-finemapping-pipeline/modifiable-finemapping-pipeline","siteSpaceId":"sitesp_cLEtR","description":"How to manually run finemapping with SuSiE and FINEMAP with the provided workflows","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"},{"label":"How to run finemapping pipeline"}]},{"id":"eo3Io6UjLuKGmDnpi47c","title":"How to run colocalization pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-colocalization-pipeline","siteSpaceId":"sitesp_cLEtR","description":"Describes how to run the new colocalization pipeline with coloc susie package","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"hgziIhVr3QdQuOs6tiN7","title":"How to run the LDSC unmodifiable pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-ldsc-pipeline","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"-MhYMPq3l2zrVIYuvWig","title":"How to run PRS pipeline","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-prs","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"RmhqXQohvrXwl9t35QWd","title":"How to calculate PRS weights for FinnGen data","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/how-to-calculate-prs-weights-for-finngen-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"afNdHYr8xyAVhMxHoTfP","title":"Managing memory in Sandbox and data filtering tips","pathname":"/working-in-the-sandbox/running-analyses-in-sandbox/managing-memory-in-sandbox-and-data-filtering-tips","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Running analyses in Sandbox"}]},{"id":"-MhYMPpYohHFGeqscILN","title":"Billing information and where to find more details","pathname":"/working-in-the-sandbox/billing-information-and-where-to-find-more-details","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"}]},{"id":"19rloJ5fC8Ayk36KQeY0","title":"Monitoring Sandbox costs by Sandbox billing report","pathname":"/working-in-the-sandbox/billing-information-and-where-to-find-more-details/monitoring-sandbox-costs-by-sandbox-billing-report","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Billing information and where to find more details"}]},{"id":"pp7IyTUPj77mRneuF4N3","title":"Monitoring Sandbox costs directly from your Google billing account","pathname":"/working-in-the-sandbox/billing-information-and-where-to-find-more-details/monitoring-sandbox-costs-directly-from-your-google-billing-account","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working in the Sandbox"},{"label":"Billing information and where to find more details"}]},{"id":"8zXF7RMORLHvBpqaR5yS","title":"Working outside the Sandbox","pathname":"/working-outside-the-sandbox","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"PdVTSrpBQTHQ5ckycEde","title":"Risteys","pathname":"/working-outside-the-sandbox/risteys-as-an-option-for-browsing-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"i9cT8YTZjaMiwrHmV9Hq","title":"Endpoint Browser","pathname":"/working-outside-the-sandbox/endpoint-browser","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"rqupzRGP8yzZRKL4kT6g","title":"PheWeb","pathname":"/working-outside-the-sandbox/link-to-how-to-use-pheweb","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"mFWPZI3pogAtt2cXEN1g","title":"Volcano plots with LAVAA","pathname":"/working-outside-the-sandbox/link-to-how-to-use-pheweb/volcano-plots-with-lavaa","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"},{"label":"PheWeb"}]},{"id":"2lye4mMr2HEfWO7oE1cW","title":"Meta-analysis PheWeb(s)","pathname":"/working-outside-the-sandbox/meta-analysis-phewebs","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"V5wKAeCibgdGXf8Ato32","title":"Coding variant browser","pathname":"/working-outside-the-sandbox/coding-variant-browser","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"bH7GpN2IVZhyt7tfw0vU","title":"Multiple Manhattan Plot (MMP)","pathname":"/working-outside-the-sandbox/multiple-manhattan-plot-mmp","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"UPTBGHFCZ49DkQox9naj","title":"How to prepare an input file for MMP","pathname":"/working-outside-the-sandbox/multiple-manhattan-plot-mmp/how-to-prepare-an-input-file-for-mmp","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"},{"label":"Multiple Manhattan Plot (MMP)"}]},{"id":"kRxEJxyGDrPJq9b6kWPC","title":"How to use MMP","pathname":"/working-outside-the-sandbox/multiple-manhattan-plot-mmp/how-to-use-mmp","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"},{"label":"Multiple Manhattan Plot (MMP)"}]},{"id":"KhDbHX2AmB1ZOkkOA7Zp","title":"LD browser","pathname":"/working-outside-the-sandbox/ld-browser","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"U3yMDt9l8bCLvEm9qf1w","title":"Green library data","pathname":"/working-outside-the-sandbox/green-library-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Working outside the Sandbox"}]},{"id":"-MhYMPpFoSz91Z_vYiZ6","title":"Publishing FinnGen results","pathname":"/publishing-finngen-results","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"-MhYMPpGd9IwDbG5rpMf","title":"Preparing manuscripts or conference abstracts","pathname":"/publishing-finngen-results/how-to-site-finngen","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Publishing FinnGen results"}]},{"id":"-MhYMPpHP86G3_BeBOui","title":"The 1-year “Exclusivity Period” Policy","pathname":"/publishing-finngen-results/genemal-policy-of-1-yr-exclusivity-period","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Publishing FinnGen results"}]},{"id":"-MhYMPpJ4V-uCLuyCPAC","title":"List of Publications using FinnGen Data","pathname":"/publishing-finngen-results/link-to-satellite-and-other-example-papers-published-on-finngen-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Publishing FinnGen results"}]},{"id":"s9IdteRRfE6KA9FMto7S","title":"How to share GWAS summary statistics with FinnGen community","pathname":"/publishing-finngen-results/how-to-share-gwas-summary-statistics","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Publishing FinnGen results"}]},{"id":"HTZVfLOyjVjw9bDRCAYM","title":"How to publish GWAS summary statistics","pathname":"/publishing-finngen-results/how-to-publish-gwas-summary-statistics","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Publishing FinnGen results"}]},{"id":"-MhYMPpKWLu86M4l5V4_","title":"Public Result Releases","pathname":"/publishing-finngen-results/data-releases","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Publishing FinnGen results"}]},{"id":"-MhYMPq41adpPXMFN2eq","title":"FAQ","pathname":"/faq","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"OWlCrNlcH3QHcaEi1G68","title":"FinnGen Spin Offs","pathname":"/faq/finngen-spin-offs","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPq56-zO2y-oi9yI","title":"FinnGen access and accounts","pathname":"/faq/about-finngen-access-and-accounts","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPq7T5hI42FmmdK_","title":"How do I apply for data access?","pathname":"/faq/about-finngen-access-and-accounts/where-do-i-apply-for-data-access","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPq61uCor8PcHhHk","title":"What is \"red\" or \"green\" data?","pathname":"/faq/about-finngen-access-and-accounts/do-i-need-red-or-green-data-access","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPq8Wm1PvO3l-_Zp","title":"I already have green data access, how do I apply for red data access?","pathname":"/faq/about-finngen-access-and-accounts/if-i-already-have-green-data-access-how-do-i-apply-for-red","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPq93DlHbXdVazPZ","title":"How do I enable two-factor authentication (2FA)?","pathname":"/faq/about-finngen-access-and-accounts/how-do-i-enable-two-factor-authentication","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPqArT8pWSg61LaA","title":"I cannot access my FinnGen account?","pathname":"/faq/about-finngen-access-and-accounts/cant-access-your-finngen-account","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPqBEJszBvyR0Y6Z","title":"How to reset account credentials","pathname":"/faq/about-finngen-access-and-accounts/how-to-reset-account-credentials","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPqCCvma-CUBiO22","title":"What to do if you suspect your account has been compromised","pathname":"/faq/about-finngen-access-and-accounts/what-to-do-if-you-suspect-your-account-has-been-compromised","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPqD93gI5zM_Livk","title":"Can't access your smartphone for 2FA?","pathname":"/faq/about-finngen-access-and-accounts/cant-access-your-smartphone-for-2fa","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-Miuu18UoPBmbXzo0DS_","title":"How do I access the FinnGen members' area?","pathname":"/faq/about-finngen-access-and-accounts/how-do-i-access-finngen-sharepoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MkvW6aUBADpWMq5WuL2","title":"How do I access FinnGen All Sharepoint?","pathname":"/faq/about-finngen-access-and-accounts/finngen-all-sharepont-e-duuni-site-how-to-log-in-for-the-first-time","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"AgbCqh9zCMrdpVdxAoUE","title":"How can I view existing analysis proposals?","pathname":"/faq/about-finngen-access-and-accounts/how-can-i-view-existing-analysis-proposals","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPqE5ZNxUvii-Nvt","title":"How can I join the FinnGen Slack?","pathname":"/faq/about-finngen-access-and-accounts/can-i-join-the-finngen-slack","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"KVfzW9Ph6zCgKJuYlBk2","title":"How do I join the FinnGen Teams group?","pathname":"/faq/about-finngen-access-and-accounts/how-do-i-join-the-finngen-teams-group","siteSpaceId":"sitesp_cLEtR","description":"FinnGen uses Microsoft Teams to enable group work and the sharing of materials with its partner organisations.","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"LH5oEmY3RsQa1QcmBA1C","title":"How to apply SES sandbox access","pathname":"/faq/about-finngen-access-and-accounts/how-to-apply-ses-sandbox-access","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"w1xStMC2tpzZvOzwJTby","title":"How to apply for FinnGen_FHRB Sandbox access","pathname":"/faq/about-finngen-access-and-accounts/how-to-apply-for-finngen_fhrb-sandbox-access","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"Fx99CIWxLvHaKpkCaMdT","title":"How to apply for FinnGen_FSZ/BPD Sandbox access","pathname":"/faq/about-finngen-access-and-accounts/how-to-apply-for-finngen_fsz-bpd-sandbox-access","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"S3oLkmGyB3XS5o9GwMKj","title":"How to manage multiple google accounts?","pathname":"/faq/about-finngen-access-and-accounts/how-to-manage-multiple-google-accounts","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen access and accounts"}]},{"id":"-MhYMPqFApeN26Su9KSJ","title":"FinnGen data","pathname":"/faq/about-finngen-data","siteSpaceId":"sitesp_cLEtR","description":"Questions related to retrieval and contents of FinnGen data.","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPqGoknQHXItNQNA","title":"What to do if I think I found a mistake in the data?","pathname":"/faq/about-finngen-data/i-think-i-found-a-mistake-in-the-longitudinal-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"-MhYMPqLar1RTaI6c-hA","title":"Where can I find a list of unrelated individuals in FinnGen?","pathname":"/faq/about-finngen-data/where-can-i-find-a-list-of-unrelated-individuals-in-finngen","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"-MhYMPqMQYIBmW1NUXvL","title":"When moving from BCOR to .txt files, what does the column called \"correlation\" mean?","pathname":"/faq/about-finngen-data/untitled-1","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"-MhYMPqPjBB4bkNaPjb8","title":"How do I calculate time between events?","pathname":"/faq/about-finngen-data/how-do-i-calculate-time-between-events","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"-MhYMPqQIiD4JjQPGXUP","title":"Can I select only the columns needed for my analysis to import into RStudio?","pathname":"/faq/about-finngen-data/can-i-select-only-the-columns-needed-for-my-analysis-to-import-into-rstudio","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"mCk3PDqbOMHYruFllh38","title":"What is the difference is between LD-clumping and the Saige conditional analysis?","pathname":"/faq/about-finngen-data/what-is-the-difference-is-between-ld-clumping-and-the-saige-conditional-analysis","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"-MhYMPqS4ZRD5czsPuCB","title":"Can I download all pairwise LD data across the genome at once?","pathname":"/faq/about-finngen-data/can-i-download-all-pairwise-ld-data-across-the-genome-at-once","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"joLJvJB78iYHRnHefQVi","title":"How to find latest data releases?","pathname":"/faq/about-finngen-data/how-to-find-latest-data-releases","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"vaZXlmKuT2OHkJHffTgX","title":"Why are there differences in the GWAS results between Data Freezes/Releases?","pathname":"/faq/about-finngen-data/why-are-there-differences-in-the-gwas-results-between-data-freezes-releases","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"FinnGen data"}]},{"id":"-MhYMPr98ajXLlwtHcrJ","title":"Citing FinnGen","pathname":"/faq/about-public-releases","siteSpaceId":"sitesp_cLEtR","description":"Information regarding publicly available data and when data becomes publicly available.","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPrBKCN6uTsNvsMT","title":"How do I cite analysis using publicly available FinnGen results?","pathname":"/faq/about-public-releases/how-do-i-cite-an-analysis-that-used-publicly-available-finngen-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Citing FinnGen"}]},{"id":"-MhYMPrDO_YUQgYNRlXw","title":"How do I cite FinnGen results that use individual level data?","pathname":"/faq/about-public-releases/how-do-i-cite-finngen-in-analyses-that-use-private-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Citing FinnGen"}]},{"id":"-MhYMPqTLnWDCzAXHOua","title":"Where can I find","pathname":"/faq/where-can-i-find","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPqVwt5FFaa9vAUt","title":"Users' Meeting materials?","pathname":"/faq/where-can-i-find/users-meeting-slides","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Where can I find"}]},{"id":"-MhYMPqXMvNIcr3HYIrb","title":"A comprehensive list of key file locations in FinnGen?","pathname":"/faq/where-can-i-find/a-comprehensive-list-of-key-file-locations-in-finngen","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Where can I find"}]},{"id":"-MhYMPqYrZALzxDYkN8B","title":"Medical code translations?","pathname":"/faq/where-can-i-find/code-translations","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Where can I find"}]},{"id":"-MhYMPqeM_zSx4vM--k6","title":"PheWeb","pathname":"/faq/about-pheweb","siteSpaceId":"sitesp_cLEtR","description":"Questions about PheWeb data and available results.","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MkvW6aw7f2lmlvmWQHB","title":"What are QQ and Manhattan plots?","pathname":"/faq/about-pheweb/what-are-qq-and-manhattan-plots","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"PheWeb"}]},{"id":"-MhYMPqfRK5I4BGNMU71","title":"How can I access PheWeb?","pathname":"/faq/about-pheweb/how-do-i-get-access-to-pheweb","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"PheWeb"}]},{"id":"-MhYMPqgutAdcyMeaSTT","title":"Are fine-mapping results that available in PheWeb also available as flat files?","pathname":"/faq/about-pheweb/can-i-have-the-finemapping-results-available-in-pheweb-as-flat-files","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"PheWeb"}]},{"id":"-MhYMPqh5qBw3lXMAC1U","title":"Do the autoreports report the 95% or 99% credible set?","pathname":"/faq/about-pheweb/do-the-autoreports-report-the-95-or-99-credible-set","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"PheWeb"}]},{"id":"-MhYMPqieg4Gzr5ASeiS","title":"Registries","pathname":"/faq/about-registries","siteSpaceId":"sitesp_cLEtR","description":"Questions about the biobanks from which FinnGen's data is acquired.","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPqjgaK9nr2Zy78M","title":"What do KELA reimbursement codes map to?","pathname":"/faq/about-registries/what-do-kela-reimbursement-codes-map-to","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Registries"}]},{"id":"-MhYMPqksphSt9EC2rOM","title":"What's the cutoff date for FinnGen data?","pathname":"/faq/about-registries/whats-the-cutoff-date-for-finngen-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Registries"}]},{"id":"-MhYMPqlRvLROaR-lT_I","title":"Sandbox","pathname":"/faq/about-sandbox","siteSpaceId":"sitesp_cLEtR","description":"Questions about the Sandbox environment.","breadcrumbs":[{"label":"FAQ"}]},{"id":"FnJ2Pzk5lNJsbRyLLIrl","title":"What is the FinnGen Sandbox?","pathname":"/faq/about-sandbox/background-of-data-safety-and-link-to-more-details","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"NFUrStp3d1QOXyqqNuX9","title":"Why does my IVM freeze while loading data into R/Rstudio","pathname":"/faq/about-sandbox/why-does-my-ivm-freeze-while-loading-data-into-r-rstudio","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"-MhYMPqmzh3AEGGYiDcg","title":"Where can I find tutorials and documentation on Sandbox?","pathname":"/faq/about-sandbox/where-can-i-find-tutorials-on-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"-MhYMPqpVksJHZhldU2h","title":"How do I get my own analysis code into Sandbox?","pathname":"/faq/about-sandbox/how-do-i-get-my-own-code-files-into-sandbox-1","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"Ae82SFAdxTLke83goBkO","title":"Where to ask for software you'd like to see in Sandbox","pathname":"/faq/about-sandbox/where-to-ask-for-software-youd-like-to-see-in-sandbox","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"-MhYMPqq43APS62T1MlA","title":"Can I share individual level data between different Sandbox users?","pathname":"/faq/about-sandbox/is-there-a-way-to-share-individual-level-data-between-different-sandbox-users","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"-MhYMPqrlHo4uOcSIbl1","title":"Is there a sun grid engine for running long scripts?","pathname":"/faq/about-sandbox/is-there-a-sun-grid-engine-for-running-long-scripts","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"-MkvW6bCNI2mOmnS9Mvi","title":"How to clear browser cache after sandbox update","pathname":"/faq/about-sandbox/how-to-clear-browser-cache-after-sandbox-update","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"wx343StIEdL0TkX9LKor","title":"How can I clean unused Docker containers from my /home/ivm/?","pathname":"/faq/about-sandbox/how-can-i-clean-unused-docker-containers-from-my-home-ivm","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"tCtwLZb4vdChe7iRe0kT","title":"Tool got stuck when opening from the Sandbox menu?","pathname":"/faq/about-sandbox/tool-got-stuck-when-opening-from-the-sandbox-menu","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"EeAVW9iW793UUdBaBhg4","title":"How do I increase the window resolution on my IVM?","pathname":"/faq/about-sandbox/how-do-i-increase-the-window-resolution-on-my-ivm","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"-MkvW6bELewmbH09I45R","title":"How can I view pdf, jpg and HTML files?","pathname":"/faq/about-sandbox/how-can-i-view-pdf-jpg-and-html-files","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"9a0i8hokQkgPyZJnNi6x","title":"My Sandbox job was killed - why?","pathname":"/faq/about-sandbox/my-sandbox-job-was-killed-why","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"FwuLNcLnRzffkfL6SOJn","title":"How to unzip files in the command line","pathname":"/faq/about-sandbox/how-to-unzip-files-in-the-command-line","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"QaZCLUwttCYzqfvSfSL5","title":"Why aren't my keyboard/shortcuts working in Sandbox like they do in my local computer?","pathname":"/faq/about-sandbox/why-arent-my-keyboard-shortcuts-working-in-sandbox-like-they-do-in-my-local-computer","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"IiBLjqeUiMl2qRbiHbHL","title":"How to know if my pipeline job was failed due preemption of worker VM","pathname":"/faq/about-sandbox/how-to-know-if-my-pipeline-job-was-failed-due-preemption-of-worker-vm","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"jJ2ULUXEMaQt98qO2KeU","title":"I cannot access the /finngen/red?","pathname":"/faq/about-sandbox/i-cannot-access-the-finngen-red","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Sandbox"}]},{"id":"-MhYMPqvLZZ6WCo8meXR","title":"Risteys","pathname":"/faq/about-risteys","siteSpaceId":"sitesp_cLEtR","description":"Questions about using Risteys.","breadcrumbs":[{"label":"FAQ"}]},{"id":"QZ71UlLmtPULPm2jrwtH","title":"Why is the case number dropping after the \"Check pre-conditions, main-only, mode, ICD version\" step?","pathname":"/faq/about-risteys/why-is-the-case-number-dropping-after-the-check-pre-conditions-main-only-mode-icd-version-step","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Risteys"}]},{"id":"-MhYMPqxni97Im9Fnbss","title":"Endpoints","pathname":"/faq/about-endpoints","siteSpaceId":"sitesp_cLEtR","description":"Questions related to FinnGen's endpoints and health outcomes available.","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPqywGfVIM-di4Io","title":"Where do I find the most recent list of FinnGen endpoints?","pathname":"/faq/about-endpoints/where-do-i-find-the-most-recent-list-of-finngen-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPqz7vAh3h1mLnqO","title":"What does it mean when an endpoint has “mode” at the end?","pathname":"/faq/about-endpoints/what-does-it-mean-when-an-endpoint-has-mode-at-the-end","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPr-b9Ly38HSGQoz","title":"What scenario would cause an NA (missing data) entry rather than a zero?","pathname":"/faq/about-endpoints/what-scenario-would-cause-an-na-missing-data-entry-rather-than-a-zero","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-Miuu19MIQCOwZ3PU7Qi","title":"Does it mean anything when a value is written as $!$ instead of NA?","pathname":"/faq/about-endpoints/does-it-mean-anything-when-a-value-is-written-as-usd-usd-instead-of-na","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPr0XIfalGkDo99e","title":"Why is there an inconsistency between ICD10 code J84.1 (IPF) and J84.112?","pathname":"/faq/about-endpoints/why-is-there-an-inconsistency-between-icd10-code-j84.1-ipf-and-j84.112","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-Miuu19P4pn_4qbYDm-D","title":"How are control endpoints calculated?","pathname":"/faq/about-endpoints/how-are-control-endpoints-calculated","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPr2OL8hWyNpjlon","title":"Can I get a list of FinnGen IDs by control group for my endpoint?","pathname":"/faq/about-endpoints/can-i-get-a-list-of-finngen-ids-by-control-group-for-my-endpoint","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPr37oXtQOc4fRi5","title":"What does Level C mean in the endpoints data table?","pathname":"/faq/about-endpoints/whats-level-c-in-the-endpoints-data-table","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPr4GK8xffD-fBCF","title":"What does the SUBSET_COV field show?","pathname":"/faq/about-endpoints/what-does-the-subset_cov-field-show","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPr5a7_rSuWHg5dq","title":"Why is there a \"K.\" prefix on some endpoints?","pathname":"/faq/about-endpoints/why-is-there-a-k.-prefix-on-some-endpoints","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"XU6app7h6dRqhJjWofbm","title":"Why there are fewer endpoints going from R5 (N = 2,925) to R8 (N = 2,202)?","pathname":"/faq/about-endpoints/why-there-are-fewer-endpoints-going-from-r5-n-2-925-to-r8-n-2-202","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"QXfX3g6Dv6VeDPOat1DH","title":"Should I include primary care registry (PRIM_OUT) codes in my cohort definitions?","pathname":"/faq/about-endpoints/should-i-include-primary-care-registry-prim_out-codes-in-my-cohort-definitions","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"ChRQEIeoI6NSm2AdeYKI","title":"I found BL_AGE after FU_END_AGE in the endpoint data, how is it possible?","pathname":"/faq/about-endpoints/i-found-bl_age-after-fu_end_age-in-the-endpoint-data-how-is-it-possible","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"WGqOxJvM3b1U0yKgi3D3","title":"Why do individuals who are not dead have death age in endpoint data?","pathname":"/faq/about-endpoints/why-individuals-who-are-not-dead-have-death-age-in-endpoint-data","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"f20n3M4QTicFayx06oLK","title":"I found EVENT_AGE after FU_END_AGE in endpoint data, how is it possible?","pathname":"/faq/about-endpoints/i-found-event_age-after-fu_end_age-in-endpoint-data-how-is-it-possible","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Endpoints"}]},{"id":"-MhYMPr6p-M2Hx7vu4Ll","title":"Pipelines","pathname":"/faq/about-pipelines","siteSpaceId":"sitesp_cLEtR","description":"Questions about commonly used FinnGen pipelines.","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPr78dF3YMxIzgVS","title":"Are there example SAIGE pipelines?","pathname":"/faq/about-pipelines/are-there-example-saige-pipelines","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Pipelines"}]},{"id":"-MhYMPr8ak6ZI8H_Af3D","title":"How do I apply finemapping to my SAIGE results?","pathname":"/faq/about-pipelines/how-do-i-apply-finemapping-to-my-saige-results","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Pipelines"}]},{"id":"SM2SwkSTXhGAS9TaEIVf","title":"Why Pipelines is claiming that my files or folders are not in /finngen/red?","pathname":"/faq/about-pipelines/files-or-folders-not-existing-in-finngen-red","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"Pipelines"}]},{"id":"BaVDEQ1yyCyjxJ2lz3VR","title":"Why does the GATE pipeline fail with no obvious reason","pathname":"/faq/about-pipelines/why-does-the-gate-pipeline-fail-with-no-obvious-reason","siteSpaceId":"sitesp_cLEtR","description":"pipeline failure with convergence error related to covariates","breadcrumbs":[{"label":"FAQ"},{"label":"Pipelines"}]},{"id":"-MhYMPrFEWwCeI1aO3Da","title":"For biobanks","pathname":"/faq/for-the-biobanks","siteSpaceId":"sitesp_cLEtR","description":"Answers to questions biobank representatives may have about FinnGen.","breadcrumbs":[{"label":"FAQ"}]},{"id":"-MhYMPrGvaHCkFbJZo0Y","title":"How to apply for data return","pathname":"/faq/for-the-biobanks/how-to-apply-for-data-return","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"FAQ"},{"label":"For biobanks"}]},{"id":"-Miuu19j7CvJo_is2q5t","title":"Release Notes","pathname":"/release-notes","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"hhFAMYPgkqxaVXHb5bNY","title":"Data Releases 2026","pathname":"/release-notes/data-releases-2026","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Release Notes"}]},{"id":"wSgCUrxmIvugFymsn6YN","title":"Data Releases 2025","pathname":"/release-notes/data-releases-2025","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Release Notes"}]},{"id":"ulrUNZ5VNa72OocqY3a1","title":"Data Releases 2024","pathname":"/release-notes/data-releases-2024","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Release Notes"}]},{"id":"6TuaAAt1Yx30HVKwtXJP","title":"Data Releases 2023","pathname":"/release-notes/data-releases-2023","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Release Notes"}]},{"id":"lQargm8uMZHtbKC8pOOV","title":"Data Releases 2022","pathname":"/release-notes/data-releases-2022","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Release Notes"}]},{"id":"Qq410BopdPQMehhRyiAO","title":"Data Releases 2021","pathname":"/release-notes/data-releases-2021","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Release Notes"}]},{"id":"ifOnqWExY7Nak246dQEX","title":"Tool Catalog","pathname":"/tool-catalog","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"ommZC8dVE4UKV6XQiPgl","title":"Glossary","pathname":"/glossary","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"LowteLcVy6tTcTU6Ixz7","title":"User Support & Training","pathname":"/user-support","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"K51bYfH6aBVSmtHILcVq","title":"Data Protection & Security","pathname":"/data-protection-and-security","siteSpaceId":"sitesp_cLEtR","description":""},{"id":"QhMPxjhO3I52aROxkLzP","title":"How do I report a data breach?","pathname":"/data-protection-and-security/how-do-i-report-a-data-breach","siteSpaceId":"sitesp_cLEtR","description":"","breadcrumbs":[{"label":"Data Protection & Security"}]}]}