Imputed genotypes in PLINK format

This page has been last updated for R11.

Sandbox directory

Imputed genotypes in the PLINK format are available in the following Sandbox directory:

/finngen/library-red/finngen_R[RELEASE]/genotype_plink_1.0

Data files

Two sets of PLINK files are available:

• all variants

• HapMap3 filtered variants

Both sets come with their .bed, .bim .fam, .afreq files.

Please refer to the readme file in sandbox directory for full details of the available data.

All variants

All variants are available in the following files:

data/finngen_R[RELEASE].bed

data/finngen_R[RELEASE].bim

data/finngen_R[RELEASE].fam

data/finngen_R[RELEASE].afreq

HapMap3 filtered variants

HapMap3 filtered variants are available in the following files:

data/finngen_R[RELEASE]_hm3.bed

data/finngen_R[RELEASE]_hm3.bim

data/finngen_R[RELEASE]_hm3.fam

data/finngen_R[RELEASE]_hm3.afreq

Further information

Read more about the Plink 2.0 data format.