LogoLogo
Ctrlk
FinnGen Handbook
  • Introduction
  • Where to begin
  • Background Concepts
  • FinnGen Data Specifics
  • Disease Specific Task Forces
  • Working in the Sandbox
    • How to get started with Sandbox
    • What is Sandbox and what can you do there
    • What do we mean by "red" and "green" data?
    • General workflows for the most common analyses
    • Quirks and Features
    • Which tools are available?
    • Working with Phenotype Data
    • Working with Genotype Data
      • Genotype Browser how to
      • Cluster Plots
      • ClusterPlot viewer V3C
      • Rare Variant Calling in V3C
      • Create map of allele
      • Genotypes from VCF files
      • Variant PheWas
      • Interpreting rare-variant analysis results
      • Tools for geno-pheno explorations
    • Running analyses in Sandbox
    • Billing information and where to find more details
  • Working outside the Sandbox
  • FAQ
  • Release Notes
  • Tool Catalog
  • Glossary
  • User Support
  • Data Protection & Security
Powered by GitBook
On this page

Was this helpful?

  1. Working in the Sandbox

Working with Genotype Data

In this section we will share the following:

  • Genotype Browser how to

  • Cluster Plots

  • ClusterPlot viewer V3C

  • Rare Variant Calling in V3C

  • Create map of allele

  • Genotypes from VCF files

  • Variant PheWas

  • Interpreting rare-variant analysis results

PreviousCreating your own user-defined endpointNextGenotype Browser how to

Last updated 8 months ago

Was this helpful?