> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/working-in-the-sandbox/running-analyses-in-sandbox.md).

# Running analyses in Sandbox

**In this section we will share the following:** A guide how you can run your own analyses in the Sandbox.

* [How to use the Pipelines tool](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-use-the-pipelines-area.md)
* [Pipelines is based on Cromwell and WDL](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/pipelines-is-based-on-cromwell-and-wdl.md)
* [How to submit a pipeline from the command line (finngen-cli)](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/how-to-submit-a-pipeline-from-a-command-line.md)
* [How to run genome-wide association studies (GWAS)](/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas.md)
* [How to run finemapping pipeline](/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-finemapping-pipeline.md)
* [How to run LDSC pipeline](/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-ldsc-pipeline.md)
* [How to run PRS pipeline](/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-prs.md)
* [How to calculate PRS weights for FinnGen data](/working-in-the-sandbox/running-analyses-in-sandbox/how-to-calculate-prs-weights-for-finngen-data.md)
* [Sandbox paths and pipeline mappings](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/sandbox-path-and-pipeline-mappings.md)
* [If your pipeline job fails](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/if-your-pipeline-job-fails.md)
* [Tips on how to find a pipeline job ID](/working-in-the-sandbox/running-analyses-in-sandbox/pipelines-tool-instructions/tips-on-how-to-find-a-pipeline-job-id.md)
* [Managing memory in Sandbox and data filtering tips](/working-in-the-sandbox/running-analyses-in-sandbox/managing-memory-in-sandbox-and-data-filtering-tips.md)

Example `.wdl` and `.json` files for running these pipelines are in SANDBOX in `/finngen/library-green/scripts/`. For example, example files for running [REGENIE pipeline](/working-in-the-sandbox/running-analyses-in-sandbox/how-to-run-genome-wide-association-studies-gwas/how-to-run-gwas-using-regenie.md) can be found under `/finngen/library-green/scripts/regenie/.`