> For the complete documentation index, see [llms.txt](https://docs.finngen.fi/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.finngen.fi/finngen-data-specifics/green-library-data-aggregate-data/core-analysis-results-files/pairwise-endpoint-genetic-correlation-format.md).

# Pairwise endpoint genetic correlation format

This pipeline produces a single file, containing all pairwise genetic correlations between multiple phenotypes.

Its name is structured as `finngen_R[?]_[EUR/FIN].ldsc.summary.tsv` where EUR/FIN changes based on the LD panel used.

(This refers to genetic correlation, in [Risteys](/working-outside-the-sandbox/risteys-as-an-option-for-browsing-endpoints.md) you can also see the number of shared cases between endpoints.)

| **Column name** | **Description**                    |
| --------------- | ---------------------------------- |
| p1              | Phenotype 1                        |
| p2              | Phenotype 2                        |
| rg              | Genetic correlation                |
| se              | Standard error                     |
| z               | z-score                            |
| p               | pvalue                             |
| h2\_obs         | heritabilty of p1                  |
| h2\_obs\_se     | SE of heritability of p1           |
| h2\_int         | heritability intercept for p1      |
| h2\_int\_se     | SE of intercept                    |
| gcov\_int       | intercept of genetic covariance    |
| gcov\_int\_se   | SE of gcov                         |
| CONVERGED       | A flag if the LDSC model converged |